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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
84804-84923
(-)
ykkC-yxkD
83255-84773 (-)
Mflv_0093
Na+/solute symporter
Mflv_0093
Single gene
DOOR ID:
2008083
Mflv_0093
View Structure
2
85042-85109
(+)
ykkC-III
85119-86268 (+)
Mflv_0094
Mflv_0094
operon
DOOR ID:
288963
Mflv_0094,
Mflv_0095,
Mflv_0096
View Structure
3
165371-165480
(+)
TPP
166331-166964 (+)
Mflv_0182
Mflv_0182
Operon
DOOR ID:
288980
Mflv_0181,
Mflv_0182,
Mflv_0183,
Mflv_0184,
Mflv_0185
View Structure
4
181548-181657
(-)
TPP
180335-180533 (-)
Mflv_0196
Thiamine biosynthesis protein ThiS
Mflv_0196
Operon
DOOR ID:
288982
Mflv_0189,
Mflv_0190,
Mflv_0191,
Mflv_0192,
Mflv_0193,
Mflv_0194,
Mflv_0195
(thiG)
,
Mflv_0196,
Mflv_0197
View Structure
5
776321-776432
(-)
TPP
774254-774512 (+)
Mflv_0753
Phosphotransferase system; phosphocarrier protein HPr
Mflv_0753
Single gene
DOOR ID:
2008262
Mflv_0753
View Structure
6
869715-869763
(-)
mini-ykkC
868507-869518 (-)
Mflv_0839
Mflv_0839
Operon
DOOR ID:
289122
Mflv_0837,
Mflv_0838,
Mflv_0839
View Structure
7
1018078-1018190
(+)
TPP
1018805-1020284 (+)
Mflv_0971
ABC transporter related protein
Mflv_0971
Operon
DOOR ID:
289150
Mflv_0970,
Mflv_0971,
Mflv_0972
View Structure
8
1494591-1494778
(+)
cobalamin
1494969-1495776 (+)
Mflv_1432
Mflv_1432
Operon
DOOR ID:
289253
Mflv_1431,
Mflv_1432,
Mflv_1433
View Structure
9
1774549-1774734
(-)
ydaO-yuaA
1773137-1774538 (-)
Mflv_1703
Transglycosylase domain protein
Mflv_1703
Single gene
DOOR ID:
2008551
Mflv_1703
View Structure
10
3232973-3233051
(+)
SAH
3236866-3237541 (+)
Mflv_3054
HAD-superfamily hydrolase; subfamily IA; variant 3
Mflv_3054
Operon
DOOR ID:
289599
Mflv_3053
(metH)
,
Mflv_3054
View Structure
11
3615657-3615755
(-)
glycine
3612640-3615499 (-)
Mflv_3398
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Mflv_3398
Operon
DOOR ID:
289679
Mflv_3397,
Mflv_3398
View Structure
12
4145792-4145912
(+)
cobalamin
4145963-4146944 (+)
Mflv_3882
Periplasmic binding protein
Mflv_3882
Operon
DOOR ID:
289780
Mflv_3882,
Mflv_3883,
Mflv_3884,
Mflv_3885
View Structure
13
4153030-4153114
(+)
SAH
4153829-4154513 (-)
Mflv_3889
Mflv_3889
Single gene
DOOR ID:
2009228
Mflv_3889
View Structure
14
5194683-5194802
(+)
SAM-IV
5194842-5196183 (+)
Mflv_4875
O-acetylhomoserine sulfhydrolase (9)
Mflv_4875
Operon
DOOR ID:
290013
Mflv_4875,
Mflv_4876
(metX)
,
Mflv_4877
View Structure
15
5531569-5531680
(+)
SAM-IV
5531713-5532289 (+)
Mflv_5188
Mflv_5188
Single gene
DOOR ID:
2009631
Mflv_5188
View Structure
16
5615811-5615877
(-)
ykkC-III
5615485-5615800 (-)
Mflv_5270
Mflv_5270
operon
DOOR ID:
290105
Mflv_5266,
Mflv_5267,
Mflv_5268,
Mflv_5269,
Mflv_5270
View Structure
Genome:
Mycobacterium gilvum PYR-GCK
(
NC_009338.1
);
Phylum:
Actinobacteria
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"84804-84923";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:11:"83255-84773";i:10;s:1:"-";i:11;s:9:"Mflv_0093";i:12;s:20:"Na+/solute symporter";i:13;s:9:"Mflv_0093";i:14;s:11:"Single gene";i:15;s:7:"2008083";i:16;s:9:"Mflv_0093";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"85042-85109";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:11:"85119-86268";i:10;s:1:"+";i:11;s:9:"Mflv_0094";i:12;s:0:"";i:13;s:9:"Mflv_0094";i:14;s:6:"operon";i:15;s:6:"288963";i:16;s:29:"Mflv_0094;Mflv_0095;Mflv_0096";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"165371-165480";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"166331-166964";i:10;s:1:"+";i:11;s:9:"Mflv_0182";i:12;s:0:"";i:13;s:9:"Mflv_0182";i:14;s:6:"Operon";i:15;s:6:"288980";i:16;s:49:"Mflv_0181;Mflv_0182;Mflv_0183;Mflv_0184;Mflv_0185";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"181548-181657";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"180335-180533";i:10;s:1:"-";i:11;s:9:"Mflv_0196";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Mflv_0196";i:14;s:6:"Operon";i:15;s:6:"288982";i:16;s:95:"Mflv_0189;Mflv_0190;Mflv_0191;Mflv_0192;Mflv_0193;Mflv_0194;Mflv_0195(thiG);Mflv_0196;Mflv_0197";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"776321-776432";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"774254-774512";i:10;s:1:"+";i:11;s:9:"Mflv_0753";i:12;s:53:"Phosphotransferase system; phosphocarrier protein HPr";i:13;s:9:"Mflv_0753";i:14;s:11:"Single gene";i:15;s:7:"2008262";i:16;s:9:"Mflv_0753";i:17;s:74:"phosphoenolpyruvate-dependent sugar phosphotransferase system [GO:0009401]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"869715-869763";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"868507-869518";i:10;s:1:"-";i:11;s:9:"Mflv_0839";i:12;s:0:"";i:13;s:9:"Mflv_0839";i:14;s:6:"Operon";i:15;s:6:"289122";i:16;s:29:"Mflv_0837;Mflv_0838;Mflv_0839";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1018078-1018190";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1018805-1020284";i:10;s:1:"+";i:11;s:9:"Mflv_0971";i:12;s:31:"ABC transporter related protein";i:13;s:9:"Mflv_0971";i:14;s:6:"Operon";i:15;s:6:"289150";i:16;s:29:"Mflv_0970;Mflv_0971;Mflv_0972";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1494591-1494778";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1494969-1495776";i:10;s:1:"+";i:11;s:9:"Mflv_1432";i:12;s:0:"";i:13;s:9:"Mflv_1432";i:14;s:6:"Operon";i:15;s:6:"289253";i:16;s:29:"Mflv_1431;Mflv_1432;Mflv_1433";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1774549-1774734";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1773137-1774538";i:10;s:1:"-";i:11;s:9:"Mflv_1703";i:12;s:31:"Transglycosylase domain protein";i:13;s:9:"Mflv_1703";i:14;s:11:"Single gene";i:15;s:7:"2008551";i:16;s:9:"Mflv_1703";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3232973-3233051";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3236866-3237541";i:10;s:1:"+";i:11;s:9:"Mflv_3054";i:12;s:50:"HAD-superfamily hydrolase; subfamily IA; variant 3";i:13;s:9:"Mflv_3054";i:14;s:6:"Operon";i:15;s:6:"289599";i:16;s:25:"Mflv_3053(metH);Mflv_3054";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3615657-3615755";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3612640-3615499";i:10;s:1:"-";i:11;s:9:"Mflv_3398";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Mflv_3398";i:14;s:6:"Operon";i:15;s:6:"289679";i:16;s:19:"Mflv_3397;Mflv_3398";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4145792-4145912";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4145963-4146944";i:10;s:1:"+";i:11;s:9:"Mflv_3882";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Mflv_3882";i:14;s:6:"Operon";i:15;s:6:"289780";i:16;s:39:"Mflv_3882;Mflv_3883;Mflv_3884;Mflv_3885";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4153030-4153114";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4153829-4154513";i:10;s:1:"-";i:11;s:9:"Mflv_3889";i:12;s:0:"";i:13;s:9:"Mflv_3889";i:14;s:11:"Single gene";i:15;s:7:"2009228";i:16;s:9:"Mflv_3889";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5194683-5194802";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"5194842-5196183";i:10;s:1:"+";i:11;s:9:"Mflv_4875";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:9:"Mflv_4875";i:14;s:6:"Operon";i:15;s:6:"290013";i:16;s:35:"Mflv_4875;Mflv_4876(metX);Mflv_4877";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5531569-5531680";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"5531713-5532289";i:10;s:1:"+";i:11;s:9:"Mflv_5188";i:12;s:0:"";i:13;s:9:"Mflv_5188";i:14;s:11:"Single gene";i:15;s:7:"2009631";i:16;s:9:"Mflv_5188";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_009338.1";i:2;s:29:"Mycobacterium gilvum PYR-GCK ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5615811-5615877";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"5615485-5615800";i:10;s:1:"-";i:11;s:9:"Mflv_5270";i:12;s:0:"";i:13;s:9:"Mflv_5270";i:14;s:6:"operon";i:15;s:6:"290105";i:16;s:49:"Mflv_5266;Mflv_5267;Mflv_5268;Mflv_5269;Mflv_5270";i:17;s:0:"";i:18;s:15:"View Structure ";}}