About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
905898-906121
(+)
cobalamin
906146-906446 (+)
Cvib_0806
Cvib_0806
Single gene
DOOR ID:
2007748
Cvib_0806
View Structure
2
906493-906733
(+)
cobalamin
906849-909003 (+)
Cvib_0807
Anaerobic ribonucleoside-triphosphate reductase
Cvib_0807
Operon
DOOR ID:
288734
Cvib_0807,
Cvib_0808,
Cvib_0809
View Structure
3
911107-911313
(+)
cobalamin
911424-912396 (+)
Cvib_0810
Alcohol dehydrogenase GroES domain protein
Cvib_0810
Single gene
DOOR ID:
2007749
Cvib_0810
View Structure
4
913712-913952
(+)
cobalamin
914014-916087 (+)
Cvib_0812
TonB-dependent receptor
Cvib_0812
Single gene
DOOR ID:
2007751
Cvib_0812
View Structure
5
1332114-1332223
(-)
SAM
1330718-1332056 (-)
Cvib_1184
O-acetylhomoserine sulfhydrolase (9)
Cvib_1184
Operon
DOOR ID:
288808
Cvib_1183,
Cvib_1184
View Structure
6
1424943-1425038
(+)
TPP
1425120-1426836 (+)
Cvib_1273
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Cvib_1273
Operon
DOOR ID:
288826
Cvib_1273,
Cvib_1274
View Structure
Genome:
Chlorobium phaeovibrioides DSM 265
(
NC_009337.1
);
Phylum:
Bacteroidetes/Chlorobi group
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009337.1";i:2;s:35:"Chlorobium phaeovibrioides DSM 265 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"905898-906121";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"906146-906446";i:10;s:1:"+";i:11;s:9:"Cvib_0806";i:12;s:0:"";i:13;s:9:"Cvib_0806";i:14;s:11:"Single gene";i:15;s:7:"2007748";i:16;s:9:"Cvib_0806";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009337.1";i:2;s:35:"Chlorobium phaeovibrioides DSM 265 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"906493-906733";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"906849-909003";i:10;s:1:"+";i:11;s:9:"Cvib_0807";i:12;s:47:"Anaerobic ribonucleoside-triphosphate reductase";i:13;s:9:"Cvib_0807";i:14;s:6:"Operon";i:15;s:6:"288734";i:16;s:29:"Cvib_0807;Cvib_0808;Cvib_0809";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009337.1";i:2;s:35:"Chlorobium phaeovibrioides DSM 265 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"911107-911313";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"911424-912396";i:10;s:1:"+";i:11;s:9:"Cvib_0810";i:12;s:42:"Alcohol dehydrogenase GroES domain protein";i:13;s:9:"Cvib_0810";i:14;s:11:"Single gene";i:15;s:7:"2007749";i:16;s:9:"Cvib_0810";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009337.1";i:2;s:35:"Chlorobium phaeovibrioides DSM 265 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"913712-913952";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"914014-916087";i:10;s:1:"+";i:11;s:9:"Cvib_0812";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Cvib_0812";i:14;s:11:"Single gene";i:15;s:7:"2007751";i:16;s:9:"Cvib_0812";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009337.1";i:2;s:35:"Chlorobium phaeovibrioides DSM 265 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1332114-1332223";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1330718-1332056";i:10;s:1:"-";i:11;s:9:"Cvib_1184";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:9:"Cvib_1184";i:14;s:6:"Operon";i:15;s:6:"288808";i:16;s:19:"Cvib_1183;Cvib_1184";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009337.1";i:2;s:35:"Chlorobium phaeovibrioides DSM 265 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1424943-1425038";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1425120-1426836";i:10;s:1:"+";i:11;s:9:"Cvib_1273";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Cvib_1273";i:14;s:6:"Operon";i:15;s:6:"288826";i:16;s:19:"Cvib_1273;Cvib_1274";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}