RiboswitchDB

Genome: Streptococcus pyogenes str. Manfredo (NC_009332.1); Phylum: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

828513-828599 (-)

glycine

827062-828385 (-)

SpyM50822

Single gene

DOOR ID: 2007090

SpyM50822

2

939667-939762 (-)

purine

938997-939579 (-)

xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)

Operon

DOOR ID: 288373

SpyM50931 (pbuX),
SpyM50932 (xpt)

3

1239300-1239415 (-)

preQ1-II

1236649-1238608 (-)

ligA

DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])

Operon

DOOR ID: 288438

SpyM51234,
SpyM51235 (ligA)

4

1356649-1356745 (+)

TPP

1356789-1357353 (+)

SpyM51364

Single gene

DOOR ID: 2007241

SpyM51364

5

1522223-1522347 (-)

FMN

1521580-1522144 (-)

SpyM51545

Operon

DOOR ID: 288497

SpyM51544,
SpyM51545

a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009332.1";i:2;s:37:"Streptococcus pyogenes str. Manfredo ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"828513-828599";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"827062-828385";i:10;s:1:"-";i:11;s:9:"SpyM50822";i:12;s:0:"";i:13;s:9:"SpyM50822";i:14;s:11:"Single gene";i:15;s:7:"2007090";i:16;s:9:"SpyM50822";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009332.1";i:2;s:37:"Streptococcus pyogenes str. Manfredo ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"939667-939762";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"938997-939579";i:10;s:1:"-";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"SpyM50932";i:14;s:6:"Operon";i:15;s:6:"288373";i:16;s:30:"SpyM50931(pbuX);SpyM50932(xpt)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009332.1";i:2;s:37:"Streptococcus pyogenes str. Manfredo ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1239300-1239415";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"1236649-1238608";i:10;s:1:"-";i:11;s:4:"ligA";i:12;s:55:"DNA ligase  (Polydeoxyribonucleotide synthase [NAD(+)])";i:13;s:9:"SpyM51235";i:14;s:6:"Operon";i:15;s:6:"288438";i:16;s:25:"SpyM51234;SpyM51235(ligA)";i:17;s:53:"DNA repair [GO:0006281]; DNA replication [GO:0006260]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009332.1";i:2;s:37:"Streptococcus pyogenes str. Manfredo ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1356649-1356745";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1356789-1357353";i:10;s:1:"+";i:11;s:9:"SpyM51364";i:12;s:0:"";i:13;s:9:"SpyM51364";i:14;s:11:"Single gene";i:15;s:7:"2007241";i:16;s:9:"SpyM51364";i:17;s:0:"";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009332.1";i:2;s:37:"Streptococcus pyogenes str. Manfredo ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1522223-1522347";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1521580-1522144";i:10;s:1:"-";i:11;s:9:"SpyM51545";i:12;s:0:"";i:13;s:9:"SpyM51545";i:14;s:6:"Operon";i:15;s:6:"288497";i:16;s:19:"SpyM51544;SpyM51545";i:17;s:0:"";i:18;s:15:"View Structure
";}}