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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
174051-174183
(-)
glycine
172846-173965 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bcep1808_0151
Single gene
DOOR ID:
2003543
Bcep1808_0151
(gcvT)
View Structure
2
174216-174319
(-)
glycine
172846-173965 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bcep1808_0151
Single gene
DOOR ID:
2003543
Bcep1808_0151
(gcvT)
View Structure
3
259725-259840
(+)
SAH
259874-261293 (+)
Bcep1808_0232
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Bcep1808_0232
Single gene
DOOR ID:
2003577
Bcep1808_0232
View Structure
4
428294-428416
(+)
TPP
428650-429802 (+)
Bcep1808_0389
Glycine oxidase (9)
Bcep1808_0389
Operon
DOOR ID:
286559
Bcep1808_0389,
Bcep1808_0390,
Bcep1808_0391
(thiG)
,
Bcep1808_0392
View Structure
5
815126-815226
(+)
ZMP-ZTP
815315-816611 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Bcep1808_0738
Operon
DOOR ID:
286637
Bcep1808_0738
(glyA)
,
Bcep1808_0739
(nrdR)
View Structure
6
1018179-1018299
(-)
yybP-ykoY
1017510-1018083 (-)
Bcep1808_0937
Bcep1808_0937
Single gene
DOOR ID:
2003806
Bcep1808_0937
View Structure
7
1237669-1237785
(-)
TPP
1235612-1237544 (-)
Bcep1808_1132
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bcep1808_1132
Single gene
DOOR ID:
2003884
Bcep1808_1132
View Structure
8
1740498-1740731
(-)
cobalamin
1739583-1740333 (-)
Bcep1808_1599
Uroporphyrinogen-III C-methyltransferase (07)
Bcep1808_1599
Operon
DOOR ID:
286812
Bcep1808_1596,
Bcep1808_1597,
Bcep1808_1598,
Bcep1808_1599
View Structure
9
1740869-1741131
(+)
cobalamin
1741318-1742377 (+)
Bcep1808_1600
Nickel/cobalt efflux system
Bcep1808_1600
Operon
DOOR ID:
286813
Bcep1808_1600,
Bcep1808_1601,
Bcep1808_1602
(cobN)
,
Bcep1808_1603,
Bcep1808_1604,
Bcep1808_1605
View Structure
10
1754922-1755111
(-)
cobalamin
1753424-1754816 (-)
Bcep1808_1610
Precorrin-3B synthase
Bcep1808_1610
Operon
DOOR ID:
286814
Bcep1808_1607,
Bcep1808_1608,
Bcep1808_1609
(cobH)
,
Bcep1808_1610
View Structure
11
2623577-2623660
(+)
SAH
2625780-2626398 (-)
Bcep1808_2366
Bcep1808_2366
Operon
DOOR ID:
286964
Bcep1808_2362,
Bcep1808_2363,
Bcep1808_2364,
Bcep1808_2365,
Bcep1808_2366
View Structure
12
2626967-2627011
(-)
mini-ykkC
2626623-2626944 (-)
Bcep1808_2367
Bcep1808_2367
Single gene
DOOR ID:
2004385
Bcep1808_2367
View Structure
13
2647416-2647527
(-)
THF
2645447-2646917 (+)
Bcep1808_2386
RNAse G
Bcep1808_2386
Single gene
DOOR ID:
2004389
Bcep1808_2386
View Structure
14
2816748-2817003
(-)
cobalamin
2815269-2816268 (-)
Bcep1808_2539
Transport system permease protein
Bcep1808_2539
Operon
DOOR ID:
287000
Bcep1808_2535,
Bcep1808_2536
(cobS)
,
Bcep1808_2537
(cobT)
,
Bcep1808_2538,
Bcep1808_2539
View Structure
15
3093349-3093497
(-)
FMN
3092519-3093230 (-)
Bcep1808_2793
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Bcep1808_2793
Single gene
DOOR ID:
2004584
Bcep1808_2793
View Structure
Genome:
Burkholderia vietnamiensis G4 chromosome I
(
NC_009256.1
);
Phylum:
Betaproteobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"174051-174183";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"172846-173965";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"Bcep1808_0151";i:14;s:11:"Single gene";i:15;s:7:"2003543";i:16;s:19:"Bcep1808_0151(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"174216-174319";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"172846-173965";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"Bcep1808_0151";i:14;s:11:"Single gene";i:15;s:7:"2003543";i:16;s:19:"Bcep1808_0151(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"259725-259840";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"259874-261293";i:10;s:1:"+";i:11;s:13:"Bcep1808_0232";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:13:"Bcep1808_0232";i:14;s:11:"Single gene";i:15;s:7:"2003577";i:16;s:13:"Bcep1808_0232";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"428294-428416";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"428650-429802";i:10;s:1:"+";i:11;s:13:"Bcep1808_0389";i:12;s:19:"Glycine oxidase (9)";i:13;s:13:"Bcep1808_0389";i:14;s:6:"Operon";i:15;s:6:"286559";i:16;s:61:"Bcep1808_0389;Bcep1808_0390;Bcep1808_0391(thiG);Bcep1808_0392";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"815126-815226";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"815315-816611";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:13:"Bcep1808_0738";i:14;s:6:"Operon";i:15;s:6:"286637";i:16;s:39:"Bcep1808_0738(glyA);Bcep1808_0739(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1018179-1018299";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1017510-1018083";i:10;s:1:"-";i:11;s:13:"Bcep1808_0937";i:12;s:0:"";i:13;s:13:"Bcep1808_0937";i:14;s:11:"Single gene";i:15;s:7:"2003806";i:16;s:13:"Bcep1808_0937";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1237669-1237785";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1235612-1237544";i:10;s:1:"-";i:11;s:13:"Bcep1808_1132";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"Bcep1808_1132";i:14;s:11:"Single gene";i:15;s:7:"2003884";i:16;s:13:"Bcep1808_1132";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1740498-1740731";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1739583-1740333";i:10;s:1:"-";i:11;s:13:"Bcep1808_1599";i:12;s:45:"Uroporphyrinogen-III C-methyltransferase (07)";i:13;s:13:"Bcep1808_1599";i:14;s:6:"Operon";i:15;s:6:"286812";i:16;s:55:"Bcep1808_1596;Bcep1808_1597;Bcep1808_1598;Bcep1808_1599";i:17;s:84:"oxidation-reduction process [GO:0055114]; siroheme biosynthetic process [GO:0019354]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1740869-1741131";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1741318-1742377";i:10;s:1:"+";i:11;s:13:"Bcep1808_1600";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:13:"Bcep1808_1600";i:14;s:6:"Operon";i:15;s:6:"286813";i:16;s:89:"Bcep1808_1600;Bcep1808_1601;Bcep1808_1602(cobN);Bcep1808_1603;Bcep1808_1604;Bcep1808_1605";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1754922-1755111";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1753424-1754816";i:10;s:1:"-";i:11;s:13:"Bcep1808_1610";i:12;s:21:"Precorrin-3B synthase";i:13;s:13:"Bcep1808_1610";i:14;s:6:"Operon";i:15;s:6:"286814";i:16;s:61:"Bcep1808_1607;Bcep1808_1608;Bcep1808_1609(cobH);Bcep1808_1610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2623577-2623660";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2625780-2626398";i:10;s:1:"-";i:11;s:13:"Bcep1808_2366";i:12;s:0:"";i:13;s:13:"Bcep1808_2366";i:14;s:6:"Operon";i:15;s:6:"286964";i:16;s:69:"Bcep1808_2362;Bcep1808_2363;Bcep1808_2364;Bcep1808_2365;Bcep1808_2366";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2626967-2627011";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2626623-2626944";i:10;s:1:"-";i:11;s:13:"Bcep1808_2367";i:12;s:0:"";i:13;s:13:"Bcep1808_2367";i:14;s:11:"Single gene";i:15;s:7:"2004385";i:16;s:13:"Bcep1808_2367";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2647416-2647527";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"2645447-2646917";i:10;s:1:"+";i:11;s:13:"Bcep1808_2386";i:12;s:8:"RNAse G ";i:13;s:13:"Bcep1808_2386";i:14;s:11:"Single gene";i:15;s:7:"2004389";i:16;s:13:"Bcep1808_2386";i:17;s:27:"RNA processing [GO:0006396]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2816748-2817003";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2815269-2816268";i:10;s:1:"-";i:11;s:13:"Bcep1808_2539";i:12;s:33:"Transport system permease protein";i:13;s:13:"Bcep1808_2539";i:14;s:6:"Operon";i:15;s:6:"287000";i:16;s:81:"Bcep1808_2535;Bcep1808_2536(cobS);Bcep1808_2537(cobT);Bcep1808_2538;Bcep1808_2539";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009256.1";i:2;s:42:"Burkholderia vietnamiensis G4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3093349-3093497";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3092519-3093230";i:10;s:1:"-";i:11;s:13:"Bcep1808_2793";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:13:"Bcep1808_2793";i:14;s:11:"Single gene";i:15;s:7:"2004584";i:16;s:13:"Bcep1808_2793";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}