Genome: Desulfotomaculum reducens MI-1 (NC_009253.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 48175-48258 (-)ZMP-ZTP45888-48120 (-)Dred_0039

Formate acetyltransferase (4)		Dred_0039Operon

DOOR ID: 285275		Dred_0038,
Dred_0039		 View Structure
2 78543-78639 (+)TPP78801-79605 (+)Dred_0071

Phosphomethylpyrimidine kinase		Dred_0071Operon

DOOR ID: 285280		Dred_0071,
Dred_0072,
Dred_0073,
Dred_0074,
Dred_0075,
Dred_0076		 View Structure
3 87012-87130 (+)ydaO-yuaA87135-88101 (+)Dred_0081

Allergen V5/Tpx-1 family protein		Dred_0081Single gene

DOOR ID: 2000793		Dred_0081 View Structure
4 107660-107768 (+)SAM107911-109111 (+)Dred_0101

Dred_0101Operon

DOOR ID: 285287		Dred_0101,
Dred_0102,
Dred_0103		 View Structure
5 307640-307794 (+)glmS307918-309748 (+)Dred_0295

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Dred_0295Single gene

DOOR ID: 2000841		Dred_0295 View Structure
6 416215-416306 (+)c-di-GMP-I416572-417394 (+)Dred_0385

Methyl-accepting chemotaxis sensory transducer		Dred_0385single gene

DOOR ID: 2000881		Dred_0385 View Structure
7 469564-469647 (-)yybP-ykoY468770-469448 (-)Dred_0428

Integral membrane protein TerC		Dred_0428Single gene

DOOR ID: 2000900		Dred_0428 View Structure
8 639690-639802 (+)TPP639876-640497 (+)Dred_0593

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		Dred_0593Operon

DOOR ID: 285380		Dred_0593,
Dred_0594		 View Structure
9 773764-773869 (+)glycine774051-775146 (+)Dred_0720

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Dred_0720Operon

DOOR ID: 285408		Dred_0720,
Dred_0721,
Dred_0722,
Dred_0723		 View Structure
10 832653-832798 (-)FMN831881-832535 (-)Dred_0778

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		Dred_0778Single gene

DOOR ID: 2001050		Dred_0778 View Structure
11 1107064-1107147 (+)c-di-GMP-I1107230-1108907 (+)Dred_1034

Type II secretion system protein E (GspE)		Dred_1034operon

DOOR ID: 285474		Dred_1034,
Dred_1035,
Dred_1036,
Dred_1037,
Dred_1038,
Dred_1039		 View Structure
12 1256280-1256362 (+)c-di-GMP-I1256452-1258318 (+)Dred_1181

Methyl-accepting chemotaxis sensory transducer		Dred_1181single gene

DOOR ID: 2001187		Dred_1181 View Structure
13 1381071-1381263 (+)cobalamin1381400-1382066 (+)Dred_1289

Response regulator receiver and ANTAR domain protein		Dred_1289Single gene

DOOR ID: 2001239		Dred_1289 View Structure
14 1747754-1747849 (+)glycine1747962-1749333 (+)Dred_1608

Amino acid carrier protein		Dred_1608Single gene

DOOR ID: 2001385		Dred_1608 View Structure
15 1796583-1796773 (+)lysine1796874-1798437 (+)Dred_1645

Transporter; NhaC family		Dred_1645Single gene

DOOR ID: 2001398		Dred_1645 View Structure
16 1916568-1916710 (-)cobalamin1914245-1916540 (-)Dred_1751

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		Dred_1751Operon

DOOR ID: 285595		Dred_1750,
Dred_1751		 View Structure
17 2013618-2013814 (+)cobalamin2014032-2014839 (-)Dred_1834

Binding-protein-dependent transport systems inner membrane component		Dred_1834Operon

DOOR ID: 285607		Dred_1834,
Dred_1835,
Dred_1836		 View Structure
18 2231354-2231434 (-)c-di-GMP-I2230474-2231302 (-)Dred_2027

Methyl-accepting chemotaxis sensory transducer		Dred_2027single gene

DOOR ID: 2001560		Dred_2027 View Structure
19 2289784-2289911 (-)FMN2288554-2289685 (-)Dred_2093

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Dred_2093Operon

DOOR ID: 285651		Dred_2090,
Dred_2091,
Dred_2092,
Dred_2093		 View Structure
20 2353671-2353812 (-)ydaO-yuaA2352396-2353665 (-)Dred_2148

Glutamate 2;3-aminomutase 		Dred_2148Single gene

DOOR ID: 2001601		Dred_2148 View Structure
21 2382760-2382861 (-)ykkC-yxkD2382499-2382697 (+)Dred_2178

Cold-shock DNA-binding protein family		Dred_2178Single gene

DOOR ID: 2001613		Dred_2178 View Structure
22 2382847-2382946 (-)purine2382499-2382697 (+)Dred_2178

Cold-shock DNA-binding protein family		Dred_2178Single gene

DOOR ID: 2001613		Dred_2178 View Structure
23 2417945-2418052 (-)SAM2417221-2417878 (-)Dred_2208

Vitamin B12 dependent methionine synthase; activation region		Dred_2208Operon

DOOR ID: 285671		Dred_2206,
Dred_2207,
Dred_2208		 View Structure
24 2445049-2445230 (-)lysine2444035-2444875 (-)Dred_2235

Amino acid ABC transporter substrate-binding protein; PAAT family		Dred_2235Operon

DOOR ID: 285675		Dred_2233,
Dred_2234,
Dred_2235		 View Structure
25 2504508-2504625 (-)MOCO2503672-2503966 (-)Dred_2290

Dred_2290Single gene

DOOR ID: 2001664		Dred_2290 View Structure
26 2515252-2515371 (+)MOCO2515504-2516377 (+)Dred_2301

Extracellular solute-binding protein; family 1		Dred_2301Single gene

DOOR ID: 2001670		Dred_2301 View Structure
27 2517886-2517987 (-)purine2516471-2517767 (-)Dred_2302

Xanthine/uracil/vitamin C permease		Dred_2302Single gene

DOOR ID: 2001671		Dred_2302 View Structure
28 2518516-2518598 (-)c-di-GMP-I2518092-2518464 (-)Dred_2303

Response regulator receiver protein		Dred_2303single gene

DOOR ID: 2001672		Dred_2303 View Structure
29 2523319-2523491 (+)ykoK2523672-2524641 (+)Dred_2307

Magnesium transport protein CorA		Dred_2307Single gene

DOOR ID: 2001676		Dred_2307 View Structure
30 2597929-2598025 (-)ykkC-yxkD2596390-2597764 (-)Dred_2372

Xanthine/uracil/vitamin C permease		Dred_2372Operon

DOOR ID: 285700		Dred_2370,
Dred_2371,
Dred_2372		 View Structure
31 2598012-2598111 (-)purine2596390-2597764 (-)Dred_2372

Xanthine/uracil/vitamin C permease		Dred_2372Operon

DOOR ID: 285700		Dred_2370,
Dred_2371,
Dred_2372		 View Structure
32 2872894-2873007 (+)SAM2873131-2874154 (+)Dred_2652

Methionine import ATP-binding protein MetN 		Dred_2652Operon

DOOR ID: 285757		Dred_2652,
Dred_2653,
Dred_2654		 View Structure
33 2907099-2907301 (-)cobalamin2906201-2906921 (-)Dred_2681

Dred_2681Operon

DOOR ID: 285762		Dred_2678,
Dred_2679,
Dred_2680,
Dred_2681		 View Structure
34 2956856-2957040 (-)cobalamin2955552-2956608 (-)Dred_2728

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Dred_2728Single gene

DOOR ID: 2001807		Dred_2728 View Structure
35 2957820-2958002 (+)cobalamin2958104-2958929 (+)Dred_2730

Anaerobic cobaltochelatase 		Dred_2730Operon

DOOR ID: 285770		Dred_2730,
Dred_2731,
Dred_2732,
Dred_2733,
Dred_2734,
Dred_2735		 View Structure
36 2967121-2967251 (-)ydaO-yuaA2966467-2967118 (-)Dred_2739

NLP/P60 protein		Dred_2739Single gene

DOOR ID: 2001812		Dred_2739 View Structure
37 3007686-3007792 (-)ykkC-yxkD3005711-3007478 (-)Dred_2771

Adenine deaminase (Adenase) (Adenine aminase) 		Dred_2771Operon

DOOR ID: 285774		Dred_2770,
Dred_2771		 View Structure
38 3007778-3007877 (-)purine3005711-3007478 (-)Dred_2771

Adenine deaminase (Adenase) (Adenine aminase) 		Dred_2771Operon

DOOR ID: 285774		Dred_2770,
Dred_2771		 View Structure
39 3033561-3033714 (+)ydaO-yuaA3033721-3034555 (+)Dred_2798

Cell wall hydrolase; SleB		Dred_2798Single gene

DOOR ID: 2001844		Dred_2798 View Structure
40 3137867-3137981 (-)TPP3136511-3137810 (-)Dred_2890

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Dred_2890Single gene

DOOR ID: 2001885		Dred_2890 View Structure
41 3256933-3257014 (-)c-di-GMP-I3256634-3256892 (-)Dred_2996

Uncharacterized protein		Dred_2996single gene

DOOR ID: 2001946		Dred_2996 View Structure
42 3367031-3367128 (-)SAM3365738-3366932 (-)Dred_3096

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Dred_3096Single gene

DOOR ID: 2001983		Dred_3096 View Structure
43 3486945-3487053 (-)TPP3486571-3486859 (-)Dred_3206

Dred_3206Operon

DOOR ID: 285863		Dred_3202,
Dred_3203,
Dred_3204,
Dred_3205,
Dred_3206		 View Structure
44 3540502-3540677 (-)cobalamin3539362-3540400 (-)Dred_3256

Alcohol dehydrogenase GroES domain protein		Dred_3256Operon

DOOR ID: 285872		Dred_3255,
Dred_3256		 View Structure