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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
33343-33443
(+)
SAH
35137-42106 (+)
SACE_0023
Beta-ketoacyl synthase (0) (PfaB family protein)
SACE_0023
Operon
DOOR ID:
283716
SACE_0018,
SACE_0019,
SACE_0020,
SACE_0021,
SACE_0022,
SACE_0023,
SACE_0024,
SACE_0025,
SACE_0026
(accA)
,
SACE_0027,
SACE_0028
View Structure
2
559560-559669
(+)
TPP
559678-560809 (+)
SACE_0506
Amino acid oxidase flavoprotein ThiO; putative
SACE_0506
Operon
DOOR ID:
283804
SACE_0506,
SACE_0507
(ThiS)
,
SACE_0508
(thiG)
View Structure
3
566638-566761
(-)
TPP
564035-564902 (-)
thiD
Phosphomethylpyrimidine kinase
SACE_0510
Operon
DOOR ID:
283805
SACE_0510
(thiD)
,
SACE_0511
(thiC)
View Structure
4
627035-627193
(-)
ydaO-yuaA
626427-627033 (-)
SACE_0567
LysM domain-containing protein (Secreted protein)
SACE_0567
Single gene
DOOR ID:
1997038
SACE_0567
View Structure
5
683556-683630
(+)
cobalamin
683737-684682 (+)
SACE_0620
Putative iron ABC transporter binding protein
SACE_0620
Operon
DOOR ID:
283824
SACE_0620,
SACE_0621,
SACE_0622
(fecC)
View Structure
6
897555-897642
(+)
SAM
897908-898928 (+)
SACE_0804
Methionine import ATP-binding protein MetN
SACE_0804
Operon
DOOR ID:
283863
SACE_0804,
SACE_0805,
SACE_0806
View Structure
7
1093457-1093545
(+)
TPP
1093584-1094631 (+)
SACE_0981
ABC transporter substrate-binding protein (Thiamine transport system substrate-binding protein)
SACE_0981
Operon
DOOR ID:
283885
SACE_0981,
SACE_0982,
SACE_0983
View Structure
8
1414388-1414592
(-)
cobalamin
1411816-1414165 (-)
nrdA
Ribonucleoside-diphosphate reductase
SACE_1283
Operon
DOOR ID:
283937
SACE_1282
(nrdB)
,
SACE_1283
(nrdA)
View Structure
9
1430048-1430143
(+)
TPP
1430952-1431693 (+)
SACE_1298
Aminopyrimidine aminohydrolase
SACE_1298
Operon
DOOR ID:
283940
SACE_1297
(thiD)
,
SACE_1298
View Structure
10
1588966-1589093
(-)
SAM
1587681-1588953 (-)
SACE_1437
Threonine synthase
SACE_1437
Single gene
DOOR ID:
1997454
SACE_1437
View Structure
11
1593002-1593136
(+)
ykkC-yxkD
1593175-1594039 (+)
SACE_1443
EamA-like transporter family protein (Possible transporter; DMT superfamily)
SACE_1443
Operon
DOOR ID:
283970
SACE_1443,
SACE_1444
View Structure
12
1677783-1677918
(+)
FMN
1678024-1678672 (+)
SACE_1530
Nicotinamide mononucleotide transporter
SACE_1530
Single gene
DOOR ID:
1997498
SACE_1530
View Structure
13
1860918-1861071
(+)
ydaO-yuaA
1861159-1862134 (+)
SACE_1692
Cell wall-associated NlpC family hydrolase (NLP/P60-family protein)
SACE_1692
Single gene
DOOR ID:
1997567
SACE_1692
View Structure
14
4206454-4206556
(-)
glycine
4203381-4206279 (-)
gcvP1
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
SACE_3842
Single gene
DOOR ID:
1998628
SACE_3842
(gcvP1)
View Structure
15
4900027-4900223
(-)
cobalamin
4898922-4899822 (-)
SACE_4375
Putative ABC transporter solute-binding protein
SACE_4375
Operon
DOOR ID:
284500
SACE_4373,
SACE_4374,
SACE_4375
View Structure
16
5303054-5303317
(+)
cobalamin
5303453-5305739 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
SACE_4744
Single gene
DOOR ID:
1999060
SACE_4744
(metE)
View Structure
17
5585156-5585244
(+)
SAH
5585357-5586608 (+)
SACE_5011
SACE_5011
Single gene
DOOR ID:
1999209
SACE_5011
View Structure
18
6403599-6403692
(+)
glycine
6403917-6405021 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SACE_5701
Operon
DOOR ID:
284707
SACE_5701
(gcvT)
,
SACE_5702
(glyA)
View Structure
19
6403694-6403798
(+)
glycine
6403917-6405021 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SACE_5701
Operon
DOOR ID:
284707
SACE_5701
(gcvT)
,
SACE_5702
(glyA)
View Structure
20
6539066-6539181
(-)
SAM-IV
6537665-6539018 (-)
SACE_5825
Cysteine desulfurase
SACE_5825
Operon
DOOR ID:
284730
SACE_5823
(rlu)
,
SACE_5824
(lspA)
,
SACE_5825
View Structure
21
6681435-6681556
(+)
cobalamin
6682041-6685647 (+)
cobN
Cobalamin biosynthesis protein N (Cobaltochelatase CobN subunit)
SACE_5955
Single gene
DOOR ID:
1999660
SACE_5955
(cobN)
View Structure
22
6688720-6688844
(-)
cobalamin
6687483-6688644 (-)
nicT2
Nickel/cobalt efflux system
SACE_5958
Single gene
DOOR ID:
1999663
SACE_5958
(nicT2)
View Structure
23
6698393-6698575
(-)
cobalamin
6696205-6698356 (-)
chlI
Magnesium chelatase subunit D (Putative magnesium-chelatase subunit)
SACE_5965
Single gene
DOOR ID:
1999665
SACE_5965
(chlI)
View Structure
24
7144779-7144886
(-)
glycine
7144263-7144635 (-)
gcvH
Glycine cleavage system H protein
SACE_6378
Operon
DOOR ID:
284836
SACE_6377
(sdaA)
,
SACE_6378
(gcvH)
View Structure
Genome:
Saccharopolyspora erythraea NRRL 2338
(
NC_009142.1
);
Phylum:
Actinobacteria
a:25:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009142.1";i:2;s:38:"Saccharopolyspora erythraea NRRL 2338 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"33343-33443";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:11:"35137-42106";i:10;s:1:"+";i:11;s:9:"SACE_0023";i:12;s:48:"Beta-ketoacyl synthase (0) (PfaB family protein)";i:13;s:9:"SACE_0023";i:14;s:6:"Operon";i:15;s:6:"283716";i:16;s:115:"SACE_0018;SACE_0019;SACE_0020;SACE_0021;SACE_0022;SACE_0023;SACE_0024;SACE_0025;SACE_0026(accA);SACE_0027;SACE_0028";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009142.1";i:2;s:38:"Saccharopolyspora erythraea NRRL 2338 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"559560-559669";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"559678-560809";i:10;s:1:"+";i:11;s:9:"SACE_0506";i:12;s:46:"Amino acid oxidase flavoprotein ThiO; 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