About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
30881-30982
(+)
TPP
31044-33195 (+)
HEAR0036
Putative TonB-dependent siderophore receptor
HEAR0036
Operon
DOOR ID:
283031
HEAR0036,
HEAR0037
View Structure
2
67813-67857
(+)
mini-ykkC
73605-74139 (+)
blc2
SNSL254_pSN254_0084
Single gene
DOOR ID:
1996692
SNSL254_pSN254_0084
(blc1)
View Structure
3
328955-329062
(+)
TPP
329171-331085 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
HEAR0337
Operon
DOOR ID:
283090
HEAR0337
(thiC)
,
HEAR0338
(thiSA)
View Structure
4
943446-943547
(-)
TPP
942092-943394 (-)
HEAR0936
Putative permease
HEAR0936
Single gene
DOOR ID:
1995712
HEAR0936
View Structure
5
963406-963624
(+)
cobalamin
963756-965712 (+)
HEAR0959
Putative TonB-like receptor
HEAR0959
Single gene
DOOR ID:
1995729
HEAR0959
View Structure
6
965934-966149
(+)
cobalamin
966296-968165 (+)
HEAR0961
Putative vitamin B12 transporter btuB (Cobalamin receptor) (Outer membrane cobalamin translocator) BtuB-like
HEAR0961
Single gene
DOOR ID:
1995730
HEAR0961
View Structure
7
2097571-2097745
(-)
FMN
2096968-2097472 (-)
ribH
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
HEAR2090
Single gene
DOOR ID:
1996150
HEAR2090
(ribH)
View Structure
8
2356707-2356811
(-)
ZMP-ZTP
2355292-2356537 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
HEAR2380
Single gene
DOOR ID:
1996253
HEAR2380
(glyA)
View Structure
9
2920178-2920256
(-)
SAH
2918711-2920151 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
HEAR2950
Single gene
DOOR ID:
1996480
HEAR2950
(sahH)
View Structure
10
3280212-3280380
(+)
yybP-ykoY
3281038-3282019 (-)
HEAR3318
Putative 2-nitropropane dioxygenase
HEAR3318
Operon
DOOR ID:
283648
HEAR3318,
HEAR3319,
HEAR3320
View Structure
Genome:
Herminiimonas arsenicoxydans
(
NC_009138.1
);
Phylum:
Betaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"30881-30982";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"31044-33195";i:10;s:1:"+";i:11;s:8:"HEAR0036";i:12;s:44:"Putative TonB-dependent siderophore receptor";i:13;s:8:"HEAR0036";i:14;s:6:"Operon";i:15;s:6:"283031";i:16;s:17:"HEAR0036;HEAR0037";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"67813-67857";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:11:"73605-74139";i:10;s:1:"+";i:11;s:4:"blc2";i:12;s:0:"";i:13;s:19:"SNSL254_pSN254_0084";i:14;s:11:"Single gene";i:15;s:7:"1996692";i:16;s:25:"SNSL254_pSN254_0084(blc1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"328955-329062";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"329171-331085";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"HEAR0337";i:14;s:6:"Operon";i:15;s:6:"283090";i:16;s:30:"HEAR0337(thiC);HEAR0338(thiSA)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"943446-943547";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"942092-943394";i:10;s:1:"-";i:11;s:8:"HEAR0936";i:12;s:17:"Putative permease";i:13;s:8:"HEAR0936";i:14;s:11:"Single gene";i:15;s:7:"1995712";i:16;s:8:"HEAR0936";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"963406-963624";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"963756-965712";i:10;s:1:"+";i:11;s:8:"HEAR0959";i:12;s:27:"Putative TonB-like receptor";i:13;s:8:"HEAR0959";i:14;s:11:"Single gene";i:15;s:7:"1995729";i:16;s:8:"HEAR0959";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"965934-966149";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"966296-968165";i:10;s:1:"+";i:11;s:8:"HEAR0961";i:12;s:108:"Putative vitamin B12 transporter btuB (Cobalamin receptor) (Outer membrane cobalamin translocator) BtuB-like";i:13;s:8:"HEAR0961";i:14;s:11:"Single gene";i:15;s:7:"1995730";i:16;s:8:"HEAR0961";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2097571-2097745";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2096968-2097472";i:10;s:1:"-";i:11;s:4:"ribH";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:8:"HEAR2090";i:14;s:11:"Single gene";i:15;s:7:"1996150";i:16;s:14:"HEAR2090(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2356707-2356811";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2355292-2356537";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:8:"HEAR2380";i:14;s:11:"Single gene";i:15;s:7:"1996253";i:16;s:14:"HEAR2380(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2920178-2920256";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2918711-2920151";i:10;s:1:"-";i:11;s:4:"sahH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"HEAR2950";i:14;s:11:"Single gene";i:15;s:7:"1996480";i:16;s:14:"HEAR2950(sahH)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009138.1";i:2;s:29:"Herminiimonas arsenicoxydans ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3280212-3280380";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3281038-3282019";i:10;s:1:"-";i:11;s:8:"HEAR3318";i:12;s:35:"Putative 2-nitropropane dioxygenase";i:13;s:8:"HEAR3318";i:14;s:6:"Operon";i:15;s:6:"283648";i:16;s:26:"HEAR3318;HEAR3319;HEAR3320";i:17;s:0:"";i:18;s:15:"View Structure ";}}
