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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
74472-74516
(-)
mini-ykkC
68189-68723 (-)
blc1
SNSL254_pSN254_0091
Single gene
DOOR ID:
1996690
SNSL254_pSN254_0091
(blc2)
View Structure
2
158329-158465
(-)
yybP-ykoY
157679-158252 (-)
BMA10247_0164
BMA10247_0164
Operon
DOOR ID:
279798
BMA10247_0164,
BMA10247_0165,
BMA10247_0166
(guaD)
,
BMA10247_0167,
BMA10247_0168
(add)
,
BMA10247_0169
(xdhC)
View Structure
3
475197-475314
(-)
TPP
473142-475074 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BMA10247_0482
Single gene
DOOR ID:
1987562
BMA10247_0482
(thiC)
View Structure
4
865427-865686
(+)
cobalamin
865790-867095 (+)
BMA10247_0881
BMA10247_0881
Single gene
DOOR ID:
1987580
BMA10247_0881
View Structure
5
883077-883283
(-)
cobalamin
881524-882973 (-)
cobG
BMA10247_0896
Operon
DOOR ID:
279931
BMA10247_0894
(cobI)
,
BMA10247_0895
(cobH)
,
BMA10247_0896
(cobG)
View Structure
6
1637816-1638083
(-)
cobalamin
1635689-1637747 (-)
BMA10247_1639
BMA10247_1639
Operon
DOOR ID:
280074
BMA10247_1634
(cobC-2)
,
BMA10247_1635
(cobS)
,
BMA10247_1636
(cobT)
,
BMA10247_1637,
BMA10247_1638,
BMA10247_1639
View Structure
7
1919793-1919893
(-)
ZMP-ZTP
1918401-1919649 (-)
glyA
BMA10247_1942
Operon
DOOR ID:
280133
BMA10247_1941
(nrdR)
,
BMA10247_1942
(glyA)
View Structure
8
2407468-2407619
(+)
FMN
2407758-2408481 (+)
ribB
BMA10247_2442
Single gene
DOOR ID:
1987830
BMA10247_2442
(ribB)
View Structure
9
2728284-2728415
(-)
TPP
2728054-2728186 (-)
BMA10247_2781
BMA10247_2781
Operon
DOOR ID:
280311
BMA10247_2777
(thiE)
,
BMA10247_2778
(thiG)
,
BMA10247_2779,
BMA10247_2780
(thiO)
,
BMA10247_2781
View Structure
10
3028838-3028974
(-)
glycine
3027621-3028740 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMA10247_3061
Operon
DOOR ID:
280370
BMA10247_3060
(gcvH)
,
BMA10247_3061
(gcvT)
View Structure
11
3029007-3029116
(-)
glycine
3027621-3028740 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMA10247_3061
Operon
DOOR ID:
280370
BMA10247_3060
(gcvH)
,
BMA10247_3061
(gcvT)
View Structure
12
3096090-3096229
(+)
SAH
3096263-3097685 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BMA10247_3134
Single gene
DOOR ID:
1987229
BMA10247_3134
(ahcY)
View Structure
Genome:
Burkholderia mallei NCTC 10247 chromosome I
(
NC_009080.1
);
Phylum:
Betaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"74472-74516";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:11:"68189-68723";i:10;s:1:"-";i:11;s:4:"blc1";i:12;s:0:"";i:13;s:19:"SNSL254_pSN254_0091";i:14;s:11:"Single gene";i:15;s:7:"1996690";i:16;s:25:"SNSL254_pSN254_0091(blc2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"158329-158465";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"157679-158252";i:10;s:1:"-";i:11;s:13:"BMA10247_0164";i:12;s:0:"";i:13;s:13:"BMA10247_0164";i:14;s:6:"Operon";i:15;s:6:"279798";i:16;s:100:"BMA10247_0164;BMA10247_0165;BMA10247_0166(guaD);BMA10247_0167;BMA10247_0168(add);BMA10247_0169(xdhC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"475197-475314";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"473142-475074";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"BMA10247_0482";i:14;s:11:"Single gene";i:15;s:7:"1987562";i:16;s:19:"BMA10247_0482(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"865427-865686";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"865790-867095";i:10;s:1:"+";i:11;s:13:"BMA10247_0881";i:12;s:0:"";i:13;s:13:"BMA10247_0881";i:14;s:11:"Single gene";i:15;s:7:"1987580";i:16;s:13:"BMA10247_0881";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"883077-883283";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"881524-882973";i:10;s:1:"-";i:11;s:4:"cobG";i:12;s:0:"";i:13;s:13:"BMA10247_0896";i:14;s:6:"Operon";i:15;s:6:"279931";i:16;s:59:"BMA10247_0894(cobI);BMA10247_0895(cobH);BMA10247_0896(cobG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1637816-1638083";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1635689-1637747";i:10;s:1:"-";i:11;s:13:"BMA10247_1639";i:12;s:0:"";i:13;s:13:"BMA10247_1639";i:14;s:6:"Operon";i:15;s:6:"280074";i:16;s:103:"BMA10247_1634(cobC-2);BMA10247_1635(cobS);BMA10247_1636(cobT);BMA10247_1637;BMA10247_1638;BMA10247_1639";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1919793-1919893";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1918401-1919649";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:0:"";i:13;s:13:"BMA10247_1942";i:14;s:6:"Operon";i:15;s:6:"280133";i:16;s:39:"BMA10247_1941(nrdR);BMA10247_1942(glyA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2407468-2407619";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2407758-2408481";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:13:"BMA10247_2442";i:14;s:11:"Single gene";i:15;s:7:"1987830";i:16;s:19:"BMA10247_2442(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2728284-2728415";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2728054-2728186";i:10;s:1:"-";i:11;s:13:"BMA10247_2781";i:12;s:0:"";i:13;s:13:"BMA10247_2781";i:14;s:6:"Operon";i:15;s:6:"280311";i:16;s:87:"BMA10247_2777(thiE);BMA10247_2778(thiG);BMA10247_2779;BMA10247_2780(thiO);BMA10247_2781";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3028838-3028974";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3027621-3028740";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"BMA10247_3061";i:14;s:6:"Operon";i:15;s:6:"280370";i:16;s:39:"BMA10247_3060(gcvH);BMA10247_3061(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3029007-3029116";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3027621-3028740";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"BMA10247_3061";i:14;s:6:"Operon";i:15;s:6:"280370";i:16;s:39:"BMA10247_3060(gcvH);BMA10247_3061(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009080.1";i:2;s:43:"Burkholderia mallei NCTC 10247 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3096090-3096229";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3096263-3097685";i:10;s:1:"+";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:13:"BMA10247_3134";i:14;s:11:"Single gene";i:15;s:7:"1987229";i:16;s:19:"BMA10247_3134(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
