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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
67008-67054
(+)
mini-ykkC
67074-67395 (+)
sugE
HEAR0072
Single gene
DOOR ID:
1995331
HEAR0072
(sugE)
View Structure
2
707533-707684
(+)
FMN
707823-708546 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BURPS1106A_0729
Single gene
DOOR ID:
1982289
BURPS1106A_0729
(ribB)
View Structure
3
1009283-1009550
(+)
cobalamin
1009618-1011676 (+)
BURPS1106A_1035
Putative TonB-dependent vitamin B12 receptor BtuB
BURPS1106A_1035
Operon
DOOR ID:
278145
BURPS1106A_1035,
BURPS1106A_1036,
BURPS1106A_1037,
BURPS1106A_1038
(cobS)
,
BURPS1106A_1039
(cobC)
View Structure
4
1378267-1378384
(-)
TPP
1376212-1378144 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BURPS1106A_1401
Single gene
DOOR ID:
1981580
BURPS1106A_1401
(thiC)
View Structure
5
1916872-1917023
(-)
cobalamin
1916236-1916677 (-)
BURPS1106A_1950
CbiG protein; truncation
BURPS1106A_1950
Operon
DOOR ID:
278316
BURPS1106A_1948
(cobB)
,
BURPS1106A_1949,
BURPS1106A_1950
View Structure
6
1917182-1917441
(+)
cobalamin
1917554-1917743 (-)
BURPS1106A_1951
BURPS1106A_1951
Single gene
DOOR ID:
1982431
BURPS1106A_1951
View Structure
7
1934996-1935202
(-)
cobalamin
1933443-1934892 (-)
cobG
Precorrin-3B synthase (3)
BURPS1106A_1967
Operon
DOOR ID:
278319
BURPS1106A_1965
(cobI)
,
BURPS1106A_1966
(cobH)
,
BURPS1106A_1967
(cobG)
View Structure
8
2924529-2924665
(+)
yybP-ykoY
2924741-2925314 (+)
BURPS1106A_2980
Putative membrane protein
BURPS1106A_2980
Operon
DOOR ID:
278533
BURPS1106A_2975
(xdhC)
,
BURPS1106A_2976
(add)
,
BURPS1106A_2977,
BURPS1106A_2978
(guaD)
,
BURPS1106A_2979,
BURPS1106A_2980
View Structure
9
3148495-3148595
(-)
ZMP-ZTP
3147103-3148351 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BURPS1106A_3234
Operon
DOOR ID:
278583
BURPS1106A_3233
(nrdR)
,
BURPS1106A_3234
(glyA)
View Structure
10
3649738-3649869
(-)
TPP
3648378-3649512 (-)
thiO
Glycine oxidase ThiO (9)
BURPS1106A_3739
Operon
DOOR ID:
278690
BURPS1106A_3736
(thiE)
,
BURPS1106A_3737
(thiG)
,
BURPS1106A_3738
(thiS)
,
BURPS1106A_3739
(thiO)
View Structure
11
3826106-3826245
(-)
SAH
3824649-3826071 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BURPS1106A_3919
Single gene
DOOR ID:
1981718
BURPS1106A_3919
(ahcY)
View Structure
12
3897793-3897902
(+)
glycine
3898168-3899287 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BURPS1106A_3997
Operon
DOOR ID:
278736
BURPS1106A_3997
(gcvT)
,
BURPS1106A_3998
(gcvH)
View Structure
13
3897935-3898071
(+)
glycine
3898168-3899287 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BURPS1106A_3997
Operon
DOOR ID:
278736
BURPS1106A_3997
(gcvT)
,
BURPS1106A_3998
(gcvH)
View Structure
Genome:
Burkholderia pseudomallei 1106a chromosome I
(
NC_009076.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"67008-67054";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:11:"67074-67395";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:8:"HEAR0072";i:14;s:11:"Single gene";i:15;s:7:"1995331";i:16;s:14:"HEAR0072(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"707533-707684";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"707823-708546";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:15:"BURPS1106A_0729";i:14;s:11:"Single gene";i:15;s:7:"1982289";i:16;s:21:"BURPS1106A_0729(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1009283-1009550";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1009618-1011676";i:10;s:1:"+";i:11;s:15:"BURPS1106A_1035";i:12;s:49:"Putative TonB-dependent vitamin B12 receptor BtuB";i:13;s:15:"BURPS1106A_1035";i:14;s:6:"Operon";i:15;s:6:"278145";i:16;s:91:"BURPS1106A_1035;BURPS1106A_1036;BURPS1106A_1037;BURPS1106A_1038(cobS);BURPS1106A_1039(cobC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1378267-1378384";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1376212-1378144";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:15:"BURPS1106A_1401";i:14;s:11:"Single gene";i:15;s:7:"1981580";i:16;s:21:"BURPS1106A_1401(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1916872-1917023";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1916236-1916677";i:10;s:1:"-";i:11;s:15:"BURPS1106A_1950";i:12;s:24:"CbiG protein; truncation";i:13;s:15:"BURPS1106A_1950";i:14;s:6:"Operon";i:15;s:6:"278316";i:16;s:53:"BURPS1106A_1948(cobB);BURPS1106A_1949;BURPS1106A_1950";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1917182-1917441";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1917554-1917743";i:10;s:1:"-";i:11;s:15:"BURPS1106A_1951";i:12;s:0:"";i:13;s:15:"BURPS1106A_1951";i:14;s:11:"Single gene";i:15;s:7:"1982431";i:16;s:15:"BURPS1106A_1951";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1934996-1935202";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1933443-1934892";i:10;s:1:"-";i:11;s:4:"cobG";i:12;s:25:"Precorrin-3B synthase (3)";i:13;s:15:"BURPS1106A_1967";i:14;s:6:"Operon";i:15;s:6:"278319";i:16;s:65:"BURPS1106A_1965(cobI);BURPS1106A_1966(cobH);BURPS1106A_1967(cobG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2924529-2924665";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2924741-2925314";i:10;s:1:"+";i:11;s:15:"BURPS1106A_2980";i:12;s:25:"Putative membrane protein";i:13;s:15:"BURPS1106A_2980";i:14;s:6:"Operon";i:15;s:6:"278533";i:16;s:112:"BURPS1106A_2975(xdhC);BURPS1106A_2976(add);BURPS1106A_2977;BURPS1106A_2978(guaD);BURPS1106A_2979;BURPS1106A_2980";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3148495-3148595";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3147103-3148351";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:15:"BURPS1106A_3234";i:14;s:6:"Operon";i:15;s:6:"278583";i:16;s:43:"BURPS1106A_3233(nrdR);BURPS1106A_3234(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3649738-3649869";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3648378-3649512";i:10;s:1:"-";i:11;s:4:"thiO";i:12;s:24:"Glycine oxidase ThiO (9)";i:13;s:15:"BURPS1106A_3739";i:14;s:6:"Operon";i:15;s:6:"278690";i:16;s:87:"BURPS1106A_3736(thiE);BURPS1106A_3737(thiG);BURPS1106A_3738(thiS);BURPS1106A_3739(thiO)";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3826106-3826245";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3824649-3826071";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:15:"BURPS1106A_3919";i:14;s:11:"Single gene";i:15;s:7:"1981718";i:16;s:21:"BURPS1106A_3919(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3897793-3897902";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3898168-3899287";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:15:"BURPS1106A_3997";i:14;s:6:"Operon";i:15;s:6:"278736";i:16;s:43:"BURPS1106A_3997(gcvT);BURPS1106A_3998(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009076.1";i:2;s:44:"Burkholderia pseudomallei 1106a chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3897935-3898071";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3898168-3899287";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:15:"BURPS1106A_3997";i:14;s:6:"Operon";i:15;s:6:"278736";i:16;s:43:"BURPS1106A_3997(gcvT);BURPS1106A_3998(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}
