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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
363276-363322
(+)
mini-ykkC
363345-363666 (+)
sugE
BMA10247_0373
Single gene
DOOR ID:
1986804
BMA10247_0373
(sugE)
View Structure
2
692475-692626
(+)
FMN
692765-693488 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BURPS668_0715
Single gene
DOOR ID:
1979550
BURPS668_0715
(ribB)
View Structure
3
1000211-1000478
(+)
cobalamin
1000546-1002604 (+)
BURPS668_1028
Putative TonB-dependent vitamin B12 receptor BtuB
BURPS668_1028
Operon
DOOR ID:
276728
BURPS668_1028,
BURPS668_1029,
BURPS668_1030,
BURPS668_1031
(cobT)
,
BURPS668_1032
(cobS)
,
BURPS668_1033
(cobC)
View Structure
4
1368070-1368187
(-)
TPP
1366015-1367947 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BURPS668_1395
Single gene
DOOR ID:
1978794
BURPS668_1395
(thiC)
View Structure
5
1911007-1911162
(-)
cobalamin
1910371-1910812 (-)
BURPS668_1934
Protein CbiG
BURPS668_1934
Operon
DOOR ID:
276894
BURPS668_1932
(cobB)
,
BURPS668_1933,
BURPS668_1934
View Structure
6
1911321-1911580
(+)
cobalamin
1911694-1911883 (-)
BURPS668_1935
BURPS668_1935
Single gene
DOOR ID:
1979816
BURPS668_1935
View Structure
7
1929218-1929424
(-)
cobalamin
1927665-1929114 (-)
cobG
Precorrin-3B synthase (3)
BURPS668_1950
Operon
DOOR ID:
276897
BURPS668_1948
(cobI)
,
BURPS668_1949
(cobH)
,
BURPS668_1950
(cobG)
View Structure
8
2877304-2877440
(+)
yybP-ykoY
2877516-2878089 (+)
BURPS668_2920
Putative membrane protein
BURPS668_2920
Operon
DOOR ID:
277101
BURPS668_2915
(xdhC)
,
BURPS668_2916
(add)
,
BURPS668_2917,
BURPS668_2918
(guaD)
,
BURPS668_2919,
BURPS668_2920
View Structure
9
3132186-3132286
(-)
ZMP-ZTP
3130794-3132042 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BURPS668_3196
Operon
DOOR ID:
277154
BURPS668_3195
(nrdR)
,
BURPS668_3196
(glyA)
View Structure
10
3602521-3602652
(-)
TPP
3602291-3602423 (-)
BURPS668_3682
BURPS668_3682
Operon
DOOR ID:
277249
BURPS668_3678
(thiE)
,
BURPS668_3679
(thiG)
,
BURPS668_3680
(thiS)
,
BURPS668_3681
(thiO)
,
BURPS668_3682
View Structure
11
3741655-3741794
(-)
SAH
3740198-3741620 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BURPS668_3838
Single gene
DOOR ID:
1979145
BURPS668_3838
(ahcY)
View Structure
12
3822499-3822608
(+)
glycine
3822874-3823993 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BURPS668_3926
Operon
DOOR ID:
277293
BURPS668_3926
(gcvT)
,
BURPS668_3927
(gcvH)
View Structure
13
3822641-3822777
(+)
glycine
3822874-3823993 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BURPS668_3926
Operon
DOOR ID:
277293
BURPS668_3926
(gcvT)
,
BURPS668_3927
(gcvH)
View Structure
Genome:
Burkholderia pseudomallei 668 chromosome I
(
NC_009074.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"363276-363322";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"363345-363666";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:13:"BMA10247_0373";i:14;s:11:"Single gene";i:15;s:7:"1986804";i:16;s:19:"BMA10247_0373(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"692475-692626";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"692765-693488";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:13:"BURPS668_0715";i:14;s:11:"Single gene";i:15;s:7:"1979550";i:16;s:19:"BURPS668_0715(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1000211-1000478";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1000546-1002604";i:10;s:1:"+";i:11;s:13:"BURPS668_1028";i:12;s:49:"Putative TonB-dependent vitamin B12 receptor BtuB";i:13;s:13:"BURPS668_1028";i:14;s:6:"Operon";i:15;s:6:"276728";i:16;s:101:"BURPS668_1028;BURPS668_1029;BURPS668_1030;BURPS668_1031(cobT);BURPS668_1032(cobS);BURPS668_1033(cobC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1368070-1368187";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1366015-1367947";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"BURPS668_1395";i:14;s:11:"Single gene";i:15;s:7:"1978794";i:16;s:19:"BURPS668_1395(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1911007-1911162";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1910371-1910812";i:10;s:1:"-";i:11;s:13:"BURPS668_1934";i:12;s:12:"Protein CbiG";i:13;s:13:"BURPS668_1934";i:14;s:6:"Operon";i:15;s:6:"276894";i:16;s:47:"BURPS668_1932(cobB);BURPS668_1933;BURPS668_1934";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1911321-1911580";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1911694-1911883";i:10;s:1:"-";i:11;s:13:"BURPS668_1935";i:12;s:0:"";i:13;s:13:"BURPS668_1935";i:14;s:11:"Single gene";i:15;s:7:"1979816";i:16;s:13:"BURPS668_1935";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1929218-1929424";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1927665-1929114";i:10;s:1:"-";i:11;s:4:"cobG";i:12;s:25:"Precorrin-3B synthase (3)";i:13;s:13:"BURPS668_1950";i:14;s:6:"Operon";i:15;s:6:"276897";i:16;s:59:"BURPS668_1948(cobI);BURPS668_1949(cobH);BURPS668_1950(cobG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2877304-2877440";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2877516-2878089";i:10;s:1:"+";i:11;s:13:"BURPS668_2920";i:12;s:25:"Putative membrane protein";i:13;s:13:"BURPS668_2920";i:14;s:6:"Operon";i:15;s:6:"277101";i:16;s:100:"BURPS668_2915(xdhC);BURPS668_2916(add);BURPS668_2917;BURPS668_2918(guaD);BURPS668_2919;BURPS668_2920";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3132186-3132286";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3130794-3132042";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:13:"BURPS668_3196";i:14;s:6:"Operon";i:15;s:6:"277154";i:16;s:39:"BURPS668_3195(nrdR);BURPS668_3196(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3602521-3602652";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3602291-3602423";i:10;s:1:"-";i:11;s:13:"BURPS668_3682";i:12;s:0:"";i:13;s:13:"BURPS668_3682";i:14;s:6:"Operon";i:15;s:6:"277249";i:16;s:93:"BURPS668_3678(thiE);BURPS668_3679(thiG);BURPS668_3680(thiS);BURPS668_3681(thiO);BURPS668_3682";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3741655-3741794";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3740198-3741620";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:13:"BURPS668_3838";i:14;s:11:"Single gene";i:15;s:7:"1979145";i:16;s:19:"BURPS668_3838(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3822499-3822608";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3822874-3823993";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"BURPS668_3926";i:14;s:6:"Operon";i:15;s:6:"277293";i:16;s:39:"BURPS668_3926(gcvT);BURPS668_3927(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009074.1";i:2;s:42:"Burkholderia pseudomallei 668 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3822641-3822777";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3822874-3823993";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"BURPS668_3926";i:14;s:6:"Operon";i:15;s:6:"277293";i:16;s:39:"BURPS668_3926(gcvT);BURPS668_3927(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}