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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
192250-192346
(+)
TPP
192414-193380 (+)
tbpA
Thiamine-binding periplasmic protein
APL_0174
Single gene
DOOR ID:
1976966
APL_0174
(tbpA)
View Structure
2
435489-435614
(+)
FMN
436963-437611 (+)
ribE
Riboflavin synthase alpha chain
APL_0383
Operon
DOOR ID:
275659
APL_0382
(ribD)
,
APL_0383
(ribE)
,
APL_0384
(ribA)
,
APL_0385
(ribH)
View Structure
3
516240-516411
(+)
lysine
516536-518054 (+)
APL_0449
Putative integral membrane protein
APL_0449
Single gene
DOOR ID:
1977066
APL_0449
View Structure
4
789439-789608
(-)
MOCO
786945-789420 (-)
torZ
Trimethylamine-N-oxide reductase
APL_0688
Single gene
DOOR ID:
1977149
APL_0688
(torZ)
View Structure
5
790908-791095
(+)
MOCO
792353-792830 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
APL_0691
Operon
DOOR ID:
275728
APL_0691
(moaC)
,
APL_0692
(moaD)
,
APL_0693
(moaE)
,
APL_0694,
APL_0695
View Structure
6
820129-820311
(+)
lysine
820408-821761 (+)
lysC
Aspartokinase
APL_0710
Single gene
DOOR ID:
1977160
APL_0710
(lysC)
View Structure
7
1268798-1268859
(+)
PreQ1
1268862-1269531 (+)
queC
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
APL_1097
Operon
DOOR ID:
275807
APL_1097
(queC)
,
APL_1098
View Structure
8
1304312-1304418
(-)
glycine
1302835-1304203 (-)
APL_1127
Predicted Na+/alanine symporter
APL_1127
Operon
DOOR ID:
275812
APL_1123,
APL_1124
(pfkA)
,
APL_1125,
APL_1126,
APL_1127
View Structure
9
1380954-1381048
(+)
preQ1-II
1381861-1382479 (+)
APL_1199
APL_1199
Single gene
DOOR ID:
1977356
APL_1199
View Structure
Genome:
Actinobacillus pleuropneumoniae serovar 5b str. L20
(
NC_009053.1
);
Phylum:
Gammaproteobacteria
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