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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
321974-322107
(+)
MOCO
323171-323648 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Sbal_0285
Operon
DOOR ID:
274845
Sbal_0284
(moaA)
,
Sbal_0285
(moaC)
View Structure
2
751936-752170
(+)
cobalamin
752278-754237 (+)
Sbal_0663
TonB-dependent receptor
Sbal_0663
Single gene
DOOR ID:
1975154
Sbal_0663
View Structure
3
892080-892254
(+)
lysine
892404-893760 (+)
Sbal_0788
Aspartokinase
Sbal_0788
Operon
DOOR ID:
274923
Sbal_0788,
Sbal_0789
View Structure
4
1022394-1022497
(-)
yybP-ykoY
1021755-1022310 (-)
Sbal_0895
Sbal_0895
Single gene
DOOR ID:
1975286
Sbal_0895
View Structure
5
1022723-1022822
(+)
c-di-GMP-I
1022944-1024390 (+)
Sbal_0896
GlcNAc-binding protein A
Sbal_0896
single gene
DOOR ID:
1975287
Sbal_0896
View Structure
6
1233467-1233513
(+)
mini-ykkC
1233536-1233857 (+)
BURPS1106A_1257
BURPS1106A_1257
Single gene
DOOR ID:
1982452
BURPS1106A_1257
View Structure
7
2095568-2095693
(+)
TPP
2095747-2097979 (+)
Sbal_1802
TonB-dependent receptor
Sbal_1802
Single gene
DOOR ID:
1975749
Sbal_1802
View Structure
8
3163325-3163365
(-)
SAM-SAH
3162082-3163048 (-)
Sbal_2695
Sbal_2695
Single gene
DOOR ID:
1976162
Sbal_2695
View Structure
9
3353637-3353833
(-)
lysine
3351988-3353557 (-)
Sbal_2845
Na+/H+ antiporter NhaC
Sbal_2845
Single gene
DOOR ID:
1976240
Sbal_2845
View Structure
10
3606352-3606440
(-)
c-di-GMP-I
3603633-3606237 (-)
Sbal_3083
Chitinase. Glycosyl Hydrolase family 18
Sbal_3083
single gene
DOOR ID:
1976321
Sbal_3083
View Structure
11
3933179-3933344
(-)
cobalamin
3932185-3933079 (-)
Sbal_3366
ABC transporter related
Sbal_3366
Operon
DOOR ID:
275390
Sbal_3365,
Sbal_3366
View Structure
12
4112389-4112519
(-)
glycine
4110780-4112139 (-)
Sbal_3506
Amino acid carrier protein
Sbal_3506
Single gene
DOOR ID:
1976547
Sbal_3506
View Structure
13
4944589-4944818
(+)
FMN
4945009-4945663 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Sbal_4219
Single gene
DOOR ID:
1976846
Sbal_4219
(ribB)
View Structure
Genome:
Shewanella baltica OS155
(
NC_009052.1
);
Phylum:
Gammaproteobacteria
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Glycosyl Hydrolase family 18 ";i:13;s:9:"Sbal_3083";i:14;s:11:"single gene";i:15;s:7:"1976321";i:16;s:9:"Sbal_3083";i:17;s:82:"carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009052.1";i:2;s:25:"Shewanella baltica OS155 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3933179-3933344";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3932185-3933079";i:10;s:1:"-";i:11;s:9:"Sbal_3366";i:12;s:23:"ABC transporter related";i:13;s:9:"Sbal_3366";i:14;s:6:"Operon";i:15;s:6:"275390";i:16;s:19:"Sbal_3365;Sbal_3366";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009052.1";i:2;s:25:"Shewanella baltica OS155 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4112389-4112519";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4110780-4112139";i:10;s:1:"-";i:11;s:9:"Sbal_3506";i:12;s:26:"Amino acid carrier protein";i:13;s:9:"Sbal_3506";i:14;s:11:"Single gene";i:15;s:7:"1976547";i:16;s:9:"Sbal_3506";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009052.1";i:2;s:25:"Shewanella baltica OS155 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4944589-4944818";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4945009-4945663";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Sbal_4219";i:14;s:11:"Single gene";i:15;s:7:"1976846";i:16;s:15:"Sbal_4219(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}
