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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
322599-322698
(-)
TPP
322002-322551 (-)
llmg_0334
Thiamine transporter ThiT (Thiamine ECF transporter S component ThiT)
llmg_0334
Single gene
DOOR ID:
1968459
llmg_0334
View Structure
2
843120-843295
(+)
lysine
843395-844289 (+)
dapA
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
llmg_0874
Single gene
DOOR ID:
1968685
llmg_0874
(dapA)
View Structure
3
1164412-1164548
(+)
FMN
1164662-1165283 (+)
llmg_1195
Riboflavin transporter RibU (Riboflavin ECF transporter S component RibU)
llmg_1195
Single gene
DOOR ID:
1968827
llmg_1195
View Structure
4
1184096-1184196
(+)
TPP
1184277-1185030 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
llmg_1216
Operon
DOOR ID:
271729
llmg_1216
(thiM)
,
llmg_1217
(thiD1)
,
llmg_1218
(thiE)
View Structure
5
1191167-1191327
(+)
ykoK
1191578-1194311 (+)
mgtA
Cation-transporting P-ATPase
llmg_1223
Single gene
DOOR ID:
1968830
llmg_1223
(mgtA)
View Structure
6
1320965-1321062
(-)
purine
1320260-1320854 (-)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
llmg_1346
Operon
DOOR ID:
271753
llmg_1345
(pbuX)
,
llmg_1346
(xpt)
View Structure
7
1450238-1450312
(-)
fluoride
1448741-1449953 (-)
llmg_1474
Putative voltage gated chloride channel
llmg_1474
Single gene
DOOR ID:
1968908
llmg_1474
View Structure
8
1504646-1504762
(-)
FMN
1503378-1504467 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
llmg_1532
Operon
DOOR ID:
271791
llmg_1529
(ribH)
,
llmg_1530
(ribA)
,
llmg_1531
(ribB)
,
llmg_1532
(ribD)
View Structure
9
1746111-1746216
(-)
preQ1-II
1744867-1745500 (-)
llmg_1759
Putative NADH-flavin reductase
llmg_1759
Single gene
DOOR ID:
1969030
llmg_1759
View Structure
10
2433379-2433560
(+)
lysine
2433657-2435184 (+)
llmg_2477
Lysine permease LysP
llmg_2477
Single gene
DOOR ID:
1969331
llmg_2477
View Structure
Genome:
Lactococcus lactis subsp. cremoris MG1363
(
NC_009004.1
);
Phylum:
Firmicutes
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"322599-322698";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"322002-322551";i:10;s:1:"-";i:11;s:9:"llmg_0334";i:12;s:69:"Thiamine transporter ThiT (Thiamine ECF transporter S component ThiT)";i:13;s:9:"llmg_0334";i:14;s:11:"Single gene";i:15;s:7:"1968459";i:16;s:9:"llmg_0334";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"843120-843295";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"843395-844289";i:10;s:1:"+";i:11;s:4:"dapA";i:12;s:58:"4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) ";i:13;s:9:"llmg_0874";i:14;s:11:"Single gene";i:15;s:7:"1968685";i:16;s:15:"llmg_0874(dapA)";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1164412-1164548";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1164662-1165283";i:10;s:1:"+";i:11;s:9:"llmg_1195";i:12;s:73:"Riboflavin transporter RibU (Riboflavin ECF transporter S component RibU)";i:13;s:9:"llmg_1195";i:14;s:11:"Single gene";i:15;s:7:"1968827";i:16;s:9:"llmg_1195";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1184096-1184196";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1184277-1185030";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"llmg_1216";i:14;s:6:"Operon";i:15;s:6:"271729";i:16;s:48:"llmg_1216(thiM);llmg_1217(thiD1);llmg_1218(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1191167-1191327";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1191578-1194311";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:29:"Cation-transporting P-ATPase ";i:13;s:9:"llmg_1223";i:14;s:11:"Single gene";i:15;s:7:"1968830";i:16;s:15:"llmg_1223(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1320965-1321062";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1320260-1320854";i:10;s:1:"-";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"llmg_1346";i:14;s:6:"Operon";i:15;s:6:"271753";i:16;s:30:"llmg_1345(pbuX);llmg_1346(xpt)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1450238-1450312";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1448741-1449953";i:10;s:1:"-";i:11;s:9:"llmg_1474";i:12;s:39:"Putative voltage gated chloride channel";i:13;s:9:"llmg_1474";i:14;s:11:"Single gene";i:15;s:7:"1968908";i:16;s:9:"llmg_1474";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1504646-1504762";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1503378-1504467";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"llmg_1532";i:14;s:6:"Operon";i:15;s:6:"271791";i:16;s:63:"llmg_1529(ribH);llmg_1530(ribA);llmg_1531(ribB);llmg_1532(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1746111-1746216";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"1744867-1745500";i:10;s:1:"-";i:11;s:9:"llmg_1759";i:12;s:30:"Putative NADH-flavin reductase";i:13;s:9:"llmg_1759";i:14;s:11:"Single gene";i:15;s:7:"1969030";i:16;s:9:"llmg_1759";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009004.1";i:2;s:42:"Lactococcus lactis subsp. cremoris MG1363 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2433379-2433560";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2433657-2435184";i:10;s:1:"+";i:11;s:9:"llmg_2477";i:12;s:20:"Lysine permease LysP";i:13;s:9:"llmg_2477";i:14;s:11:"Single gene";i:15;s:7:"1969331";i:16;s:9:"llmg_2477";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}}
