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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
277923-278129
(+)
cobalamin
278232-279681 (+)
BMA10229_A0264
Precorrin-3B synthase (3)
BMA10229_A0264
Operon
DOOR ID:
270458
BMA10229_A0264,
BMA10229_A0265
(cobH)
,
BMA10229_A0266
(cobI)
View Structure
2
295520-295779
(-)
cobalamin
294110-295415 (-)
BMA10229_A0279
Nickel/cobalt efflux system
BMA10229_A0279
Single gene
DOOR ID:
1966675
BMA10229_A0279
View Structure
3
295938-296090
(+)
cobalamin
296284-296737 (+)
BMA10229_A0280
Cobalamin biosynthesis protein CbiG
BMA10229_A0280
Operon
DOOR ID:
270461
BMA10229_A0280,
BMA10229_A0281
(cobO)
,
BMA10229_A0282
(cobB)
View Structure
4
685819-685936
(+)
TPP
686058-687990 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BMA10229_A0670
Single gene
DOOR ID:
1966635
BMA10229_A0670
(thiC)
View Structure
5
1003742-1003878
(+)
yybP-ykoY
1003954-1004527 (+)
BMA10229_A0983
Putative membrane protein
BMA10229_A0983
Operon
DOOR ID:
270599
BMA10229_A0978
(xdhC)
,
BMA10229_A0979
(add)
,
BMA10229_A0980,
BMA10229_A0981
(guaD)
,
BMA10229_A0982,
BMA10229_A0983
View Structure
6
1222974-1223020
(+)
mini-ykkC
1223043-1223364 (+)
BURPS668_1249
BURPS668_1249
Single gene
DOOR ID:
1979516
BURPS668_1249
View Structure
7
1574927-1575036
(+)
glycine
1575302-1576421 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMA10229_A1542
Operon
DOOR ID:
270721
BMA10229_A1542
(gcvT)
,
BMA10229_A1543
(gcvH)
View Structure
8
1575069-1575205
(+)
glycine
1575302-1576421 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMA10229_A1542
Operon
DOOR ID:
270721
BMA10229_A1542
(gcvT)
,
BMA10229_A1543
(gcvH)
View Structure
9
1743010-1743149
(+)
SAH
1743183-1744605 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BMA10229_A1701
Single gene
DOOR ID:
1966486
BMA10229_A1701
(ahcY)
View Structure
10
1826084-1826215
(+)
TPP
1826440-1827574 (+)
thiO
Glycine oxidase ThiO (9)
BMA10229_A1773
Operon
DOOR ID:
270773
BMA10229_A1773
(thiO)
,
BMA10229_A1774,
BMA10229_A1775
(thiG)
,
BMA10229_A1776
(thiE)
View Structure
11
2399472-2399623
(+)
FMN
2399762-2400485 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BMA10229_A2362
Single gene
DOOR ID:
1967529
BMA10229_A2362
(ribB)
View Structure
12
2699085-2699185
(+)
ZMP-ZTP
2699328-2700576 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BMA10229_A2668
Operon
DOOR ID:
270973
BMA10229_A2668
(glyA)
,
BMA10229_A2669
(nrdR)
View Structure
13
2980298-2980565
(+)
cobalamin
2980633-2982691 (+)
BMA10229_A2959
Putative TonB-dependent vitamin B12 receptor BtuB
BMA10229_A2959
Operon
DOOR ID:
271033
BMA10229_A2959,
BMA10229_A2960,
BMA10229_A2961,
BMA10229_A2962
(cobT)
,
BMA10229_A2963
(cobS)
,
BMA10229_A2964,
BMA10229_A2966
View Structure
Genome:
Burkholderia mallei NCTC 10229 chromosome I
(
NC_008836.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"277923-278129";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"278232-279681";i:10;s:1:"+";i:11;s:14:"BMA10229_A0264";i:12;s:25:"Precorrin-3B synthase (3)";i:13;s:14:"BMA10229_A0264";i:14;s:6:"Operon";i:15;s:6:"270458";i:16;s:56:"BMA10229_A0264;BMA10229_A0265(cobH);BMA10229_A0266(cobI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"295520-295779";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"294110-295415";i:10;s:1:"-";i:11;s:14:"BMA10229_A0279";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:14:"BMA10229_A0279";i:14;s:11:"Single gene";i:15;s:7:"1966675";i:16;s:14:"BMA10229_A0279";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"295938-296090";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"296284-296737";i:10;s:1:"+";i:11;s:14:"BMA10229_A0280";i:12;s:35:"Cobalamin biosynthesis protein CbiG";i:13;s:14:"BMA10229_A0280";i:14;s:6:"Operon";i:15;s:6:"270461";i:16;s:56:"BMA10229_A0280;BMA10229_A0281(cobO);BMA10229_A0282(cobB)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"685819-685936";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"686058-687990";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:14:"BMA10229_A0670";i:14;s:11:"Single gene";i:15;s:7:"1966635";i:16;s:20:"BMA10229_A0670(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1003742-1003878";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1003954-1004527";i:10;s:1:"+";i:11;s:14:"BMA10229_A0983";i:12;s:25:"Putative membrane protein";i:13;s:14:"BMA10229_A0983";i:14;s:6:"Operon";i:15;s:6:"270599";i:16;s:106:"BMA10229_A0978(xdhC);BMA10229_A0979(add);BMA10229_A0980;BMA10229_A0981(guaD);BMA10229_A0982;BMA10229_A0983";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1222974-1223020";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1223043-1223364";i:10;s:1:"+";i:11;s:13:"BURPS668_1249";i:12;s:0:"";i:13;s:13:"BURPS668_1249";i:14;s:11:"Single gene";i:15;s:7:"1979516";i:16;s:13:"BURPS668_1249";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1574927-1575036";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1575302-1576421";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:14:"BMA10229_A1542";i:14;s:6:"Operon";i:15;s:6:"270721";i:16;s:41:"BMA10229_A1542(gcvT);BMA10229_A1543(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1575069-1575205";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1575302-1576421";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:14:"BMA10229_A1542";i:14;s:6:"Operon";i:15;s:6:"270721";i:16;s:41:"BMA10229_A1542(gcvT);BMA10229_A1543(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1743010-1743149";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1743183-1744605";i:10;s:1:"+";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:14:"BMA10229_A1701";i:14;s:11:"Single gene";i:15;s:7:"1966486";i:16;s:20:"BMA10229_A1701(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1826084-1826215";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1826440-1827574";i:10;s:1:"+";i:11;s:4:"thiO";i:12;s:24:"Glycine oxidase ThiO (9)";i:13;s:14:"BMA10229_A1773";i:14;s:6:"Operon";i:15;s:6:"270773";i:16;s:77:"BMA10229_A1773(thiO);BMA10229_A1774;BMA10229_A1775(thiG);BMA10229_A1776(thiE)";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2399472-2399623";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2399762-2400485";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:14:"BMA10229_A2362";i:14;s:11:"Single gene";i:15;s:7:"1967529";i:16;s:20:"BMA10229_A2362(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2699085-2699185";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2699328-2700576";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:14:"BMA10229_A2668";i:14;s:6:"Operon";i:15;s:6:"270973";i:16;s:41:"BMA10229_A2668(glyA);BMA10229_A2669(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008836.1";i:2;s:43:"Burkholderia mallei NCTC 10229 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2980298-2980565";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2980633-2982691";i:10;s:1:"+";i:11;s:14:"BMA10229_A2959";i:12;s:49:"Putative TonB-dependent vitamin B12 receptor BtuB";i:13;s:14:"BMA10229_A2959";i:14;s:6:"Operon";i:15;s:6:"271033";i:16;s:116:"BMA10229_A2959;BMA10229_A2960;BMA10229_A2961;BMA10229_A2962(cobT);BMA10229_A2963(cobS);BMA10229_A2964;BMA10229_A2966";i:17;s:0:"";i:18;s:15:"View Structure ";}}
