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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
179232-179332
(+)
SAH
179395-182167 (+)
Mpe_A0168
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Mpe_A0168
Single gene
DOOR ID:
1964407
Mpe_A0168
View Structure
2
403919-404093
(+)
yybP-ykoY
404101-404677 (+)
Mpe_A0366
Putative transmembrane protein
Mpe_A0366
Single gene
DOOR ID:
1964464
Mpe_A0366
View Structure
3
1545023-1545139
(-)
glycine
1543833-1544979 (-)
Mpe_A1433
Aminomethyltransferase (0)
Mpe_A1433
Operon
DOOR ID:
269310
Mpe_A1427,
Mpe_A1428,
Mpe_A1429,
Mpe_A1430,
Mpe_A1431,
Mpe_A1432,
Mpe_A1433
View Structure
4
1545149-1545251
(-)
glycine
1543833-1544979 (-)
Mpe_A1433
Aminomethyltransferase (0)
Mpe_A1433
Operon
DOOR ID:
269310
Mpe_A1427,
Mpe_A1428,
Mpe_A1429,
Mpe_A1430,
Mpe_A1431,
Mpe_A1432,
Mpe_A1433
View Structure
5
1612136-1612248
(-)
TPP
1609933-1612069 (-)
Mpe_A1495
TonB-dependent siderophore receptor; putative
Mpe_A1495
Single gene
DOOR ID:
1964780
Mpe_A1495
View Structure
6
1738995-1739098
(-)
TPP
1737034-1738921 (-)
Mpe_A1610
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Mpe_A1610
Operon
DOOR ID:
269350
Mpe_A1606,
Mpe_A1607,
Mpe_A1608,
Mpe_A1609,
Mpe_A1610
View Structure
7
2475478-2475725
(-)
cobalamin
2473407-2475408 (-)
btuB
TonB-dependent outer membrane cobalamin receptor
Mpe_A2309
Operon
DOOR ID:
269507
Mpe_A2301
(gmpB)
,
Mpe_A2302
(copS)
,
Mpe_A2303,
Mpe_A2304
(copQ)
,
Mpe_A2305
(fecE)
,
Mpe_A2306
(fepD)
,
Mpe_A2307
(fepB)
,
Mpe_A2308
(cobU)
,
Mpe_A2309
(btuB)
View Structure
8
3122956-3123073
(+)
ZMP-ZTP
3123120-3124386 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Mpe_A2938
Operon
DOOR ID:
269651
Mpe_A2938
(glyA)
,
Mpe_A2939
(nrdR)
View Structure
9
3494432-3494509
(+)
SAH
3494580-3496014 (+)
Mpe_A3286
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Mpe_A3286
Operon
DOOR ID:
269729
Mpe_A3286,
Mpe_A3287
View Structure
10
4029892-4029991
(+)
SAH
4030154-4030757 (+)
Mpe_A3811
Mpe_A3811
Operon
DOOR ID:
269841
Mpe_A3810,
Mpe_A3811
View Structure
Genome:
Methylibium petroleiphilum PM1
(
NC_008825.1
);
Phylum:
Betaproteobacteria
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putative";i:13;s:9:"Mpe_A1495";i:14;s:11:"Single gene";i:15;s:7:"1964780";i:16;s:9:"Mpe_A1495";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008825.1";i:2;s:31:"Methylibium petroleiphilum PM1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1738995-1739098";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1737034-1738921";i:10;s:1:"-";i:11;s:9:"Mpe_A1610";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Mpe_A1610";i:14;s:6:"Operon";i:15;s:6:"269350";i:16;s:49:"Mpe_A1606;Mpe_A1607;Mpe_A1608;Mpe_A1609;Mpe_A1610";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008825.1";i:2;s:31:"Methylibium petroleiphilum PM1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2475478-2475725";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2473407-2475408";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:48:"TonB-dependent outer membrane cobalamin receptor";i:13;s:9:"Mpe_A2309";i:14;s:6:"Operon";i:15;s:6:"269507";i:16;s:137:"Mpe_A2301(gmpB);Mpe_A2302(copS);Mpe_A2303;Mpe_A2304(copQ);Mpe_A2305(fecE);Mpe_A2306(fepD);Mpe_A2307(fepB);Mpe_A2308(cobU);Mpe_A2309(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008825.1";i:2;s:31:"Methylibium petroleiphilum PM1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3122956-3123073";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3123120-3124386";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Mpe_A2938";i:14;s:6:"Operon";i:15;s:6:"269651";i:16;s:31:"Mpe_A2938(glyA);Mpe_A2939(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008825.1";i:2;s:31:"Methylibium petroleiphilum PM1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3494432-3494509";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3494580-3496014";i:10;s:1:"+";i:11;s:9:"Mpe_A3286";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Mpe_A3286";i:14;s:6:"Operon";i:15;s:6:"269729";i:16;s:19:"Mpe_A3286;Mpe_A3287";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008825.1";i:2;s:31:"Methylibium petroleiphilum PM1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4029892-4029991";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4030154-4030757";i:10;s:1:"+";i:11;s:9:"Mpe_A3811";i:12;s:0:"";i:13;s:9:"Mpe_A3811";i:14;s:6:"Operon";i:15;s:6:"269841";i:16;s:19:"Mpe_A3810;Mpe_A3811";i:17;s:0:"";i:18;s:15:"View Structure ";}}
