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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1374161-1374266
(+)
TPP
1374355-1375966 (+)
Hhal_1268
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Hhal_1268
Single gene
DOOR ID:
1957317
Hhal_1268
View Structure
2
1425650-1425831
(+)
ykoK
1425980-1426616 (+)
Hhal_1315
MgtE integral membrane region
Hhal_1315
Single gene
DOOR ID:
1957343
Hhal_1315
View Structure
3
1464094-1464268
(-)
cobalamin
1462847-1463963 (-)
Hhal_1354
Periplasmic binding protein
Hhal_1354
Operon
DOOR ID:
265934
Hhal_1341,
Hhal_1342,
Hhal_1343,
Hhal_1344,
Hhal_1345,
Hhal_1346,
Hhal_1347,
Hhal_1348,
Hhal_1349,
Hhal_1350,
Hhal_1351,
Hhal_1352,
Hhal_1353,
Hhal_1354
View Structure
4
2102161-2102406
(-)
cobalamin
2099950-2102032 (-)
Hhal_1906
TonB-dependent receptor
Hhal_1906
Single gene
DOOR ID:
1957486
Hhal_1906
View Structure
5
2122662-2122900
(-)
cobalamin
2120644-2122528 (-)
Hhal_1926
TonB-dependent receptor
Hhal_1926
Operon
DOOR ID:
266069
Hhal_1925,
Hhal_1926
View Structure
6
2123820-2124072
(+)
cobalamin
2124216-2126247 (+)
Hhal_1928
TonB-dependent receptor
Hhal_1928
Operon
DOOR ID:
266070
Hhal_1928,
Hhal_1929
(cbiD)
View Structure
7
2583259-2583363
(+)
ykkC-yxkD
2583371-2584508 (+)
Hhal_2356
Sulfonate ABC transporter periplasmic-binding protein
Hhal_2356
Operon
DOOR ID:
266155
Hhal_2356,
Hhal_2357,
Hhal_2358,
Hhal_2359,
Hhal_2360,
Hhal_2361,
Hhal_2362,
Hhal_2363
View Structure
Genome:
Halorhodospira halophila SL1
(
NC_008789.1
);
Phylum:
Gammaproteobacteria
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