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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
736181-736268
(-)
SAH
734690-736112 (-)
Veis_0656
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Veis_0656
Operon
DOOR ID:
264369
Veis_0655,
Veis_0656
View Structure
2
1707364-1707489
(-)
TPP
1705370-1707266 (-)
Veis_1523
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Veis_1523
Single gene
DOOR ID:
1955698
Veis_1523
View Structure
3
4178508-4178625
(+)
ykkC-yxkD
4178680-4179511 (+)
Veis_3788
Binding-protein-dependent transport systems inner membrane component
Veis_3788
Operon
DOOR ID:
265028
Veis_3788,
Veis_3789,
Veis_3790,
Veis_3791,
Veis_3792
View Structure
4
4342776-4342871
(+)
glycine
4342973-4344200 (+)
Veis_3957
Glycine cleavage system T protein
Veis_3957
Single gene
DOOR ID:
1956434
Veis_3957
View Structure
5
4342889-4343009
(+)
glycine
4344237-4344612 (+)
Veis_3958
Glycine cleavage system H protein
Veis_3958
Operon
DOOR ID:
265064
Veis_3958,
Veis_3959
View Structure
6
4684351-4684518
(+)
ZMP-ZTP
4685839-4686289 (+)
nrdR
Transcriptional repressor NrdR
Veis_4247
Operon
DOOR ID:
265132
Veis_4246,
Veis_4247
(nrdR)
View Structure
7
4844594-4844659
(-)
SAH
4842313-4843762 (-)
Veis_4396
Flagellar hook-associated protein 2 (HAP2) (Flagellar cap protein)
Veis_4396
Operon
DOOR ID:
265169
Veis_4396,
Veis_4397
View Structure
8
5267247-5267492
(+)
cobalamin
5267590-5269465 (+)
Veis_4773
TonB-dependent receptor
Veis_4773
Single gene
DOOR ID:
1956648
Veis_4773
View Structure
Genome:
Verminephrobacter eiseniae EF01-2
(
NC_008786.1
);
Phylum:
Betaproteobacteria
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