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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
797687-797733
(-)
mini-ykkC
797342-797663 (-)
sugE
BMA10229_A0777
Single gene
DOOR ID:
1967604
BMA10229_A0777
(sugE)
View Structure
2
834517-834617
(+)
ZMP-ZTP
834760-836008 (+)
glyA
BMASAVP1_A0834
Operon
DOOR ID:
263662
BMASAVP1_A0834
(glyA)
,
BMASAVP1_A0835
(nrdR)
View Structure
3
1184147-1184264
(-)
TPP
1182092-1184024 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BMASAVP1_A1197
Single gene
DOOR ID:
1954347
BMASAVP1_A1197
(thiC)
View Structure
4
1577631-1577837
(+)
cobalamin
1577940-1579389 (+)
BMASAVP1_A1602
BMASAVP1_A1602
Operon
DOOR ID:
263812
BMASAVP1_A1602,
BMASAVP1_A1603
(cobH)
,
BMASAVP1_A1604
(cobI)
View Structure
5
1595230-1595489
(-)
cobalamin
1593844-1595125 (-)
hoxN
BMASAVP1_A1617
Single gene
DOOR ID:
1954034
BMASAVP1_A1617
(hoxN)
View Structure
6
1595648-1595800
(+)
cobalamin
1595994-1596447 (+)
BMASAVP1_A1618
BMASAVP1_A1618
Operon
DOOR ID:
263815
BMASAVP1_A1618,
BMASAVP1_A1619
(cobO)
,
BMASAVP1_A1620
(cobB)
View Structure
7
2333099-2333367
(-)
cobalamin
2330972-2333030 (-)
BMASAVP1_A2327
BMASAVP1_A2327
Operon
DOOR ID:
263970
BMASAVP1_A2322,
BMASAVP1_A2323
(cobS)
,
BMASAVP1_A2324
(cobT)
,
BMASAVP1_A2325,
BMASAVP1_A2326,
BMASAVP1_A2327
View Structure
8
2593845-2593981
(+)
yybP-ykoY
2594057-2594630 (+)
BMASAVP1_A2611
BMASAVP1_A2611
Operon
DOOR ID:
264028
BMASAVP1_A2606
(xdhC)
,
BMASAVP1_A2607
(add)
,
BMASAVP1_A2608,
BMASAVP1_A2609
(guaD)
,
BMASAVP1_A2610,
BMASAVP1_A2611
View Structure
9
2695507-2695658
(-)
FMN
2694644-2695367 (-)
ribB
BMASAVP1_A2716
Single gene
DOOR ID:
1954699
BMASAVP1_A2716
(ribB)
View Structure
10
3192158-3192289
(+)
TPP
3192386-3192518 (+)
BMASAVP1_A3223
BMASAVP1_A3223
Operon
DOOR ID:
264156
BMASAVP1_A3223,
BMASAVP1_A3224
(thiO)
,
BMASAVP1_A3225,
BMASAVP1_A3226
(thiG)
,
BMASAVP1_A3227
(thiE)
View Structure
11
3265642-3265751
(+)
glycine
3266017-3267136 (+)
gcvT
BMASAVP1_A3309
Operon
DOOR ID:
264177
BMASAVP1_A3309
(gcvT)
,
BMASAVP1_A3310
(gcvH)
View Structure
12
3265784-3265920
(+)
glycine
3266017-3267136 (+)
gcvT
BMASAVP1_A3309
Operon
DOOR ID:
264177
BMASAVP1_A3309
(gcvT)
,
BMASAVP1_A3310
(gcvH)
View Structure
13
3382134-3382273
(-)
SAH
3380677-3382099 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BMASAVP1_A3417
Single gene
DOOR ID:
1954511
BMASAVP1_A3417
(ahcY)
View Structure
Genome:
Burkholderia mallei SAVP1 chromosome I
(
NC_008785.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"797687-797733";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"797342-797663";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:14:"BMA10229_A0777";i:14;s:11:"Single gene";i:15;s:7:"1967604";i:16;s:20:"BMA10229_A0777(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"834517-834617";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"834760-836008";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:0:"";i:13;s:14:"BMASAVP1_A0834";i:14;s:6:"Operon";i:15;s:6:"263662";i:16;s:41:"BMASAVP1_A0834(glyA);BMASAVP1_A0835(nrdR)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1184147-1184264";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1182092-1184024";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:14:"BMASAVP1_A1197";i:14;s:11:"Single gene";i:15;s:7:"1954347";i:16;s:20:"BMASAVP1_A1197(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1577631-1577837";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1577940-1579389";i:10;s:1:"+";i:11;s:14:"BMASAVP1_A1602";i:12;s:0:"";i:13;s:14:"BMASAVP1_A1602";i:14;s:6:"Operon";i:15;s:6:"263812";i:16;s:56:"BMASAVP1_A1602;BMASAVP1_A1603(cobH);BMASAVP1_A1604(cobI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1595230-1595489";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1593844-1595125";i:10;s:1:"-";i:11;s:4:"hoxN";i:12;s:0:"";i:13;s:14:"BMASAVP1_A1617";i:14;s:11:"Single gene";i:15;s:7:"1954034";i:16;s:20:"BMASAVP1_A1617(hoxN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1595648-1595800";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1595994-1596447";i:10;s:1:"+";i:11;s:14:"BMASAVP1_A1618";i:12;s:0:"";i:13;s:14:"BMASAVP1_A1618";i:14;s:6:"Operon";i:15;s:6:"263815";i:16;s:56:"BMASAVP1_A1618;BMASAVP1_A1619(cobO);BMASAVP1_A1620(cobB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2333099-2333367";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2330972-2333030";i:10;s:1:"-";i:11;s:14:"BMASAVP1_A2327";i:12;s:0:"";i:13;s:14:"BMASAVP1_A2327";i:14;s:6:"Operon";i:15;s:6:"263970";i:16;s:101:"BMASAVP1_A2322;BMASAVP1_A2323(cobS);BMASAVP1_A2324(cobT);BMASAVP1_A2325;BMASAVP1_A2326;BMASAVP1_A2327";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2593845-2593981";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2594057-2594630";i:10;s:1:"+";i:11;s:14:"BMASAVP1_A2611";i:12;s:0:"";i:13;s:14:"BMASAVP1_A2611";i:14;s:6:"Operon";i:15;s:6:"264028";i:16;s:106:"BMASAVP1_A2606(xdhC);BMASAVP1_A2607(add);BMASAVP1_A2608;BMASAVP1_A2609(guaD);BMASAVP1_A2610;BMASAVP1_A2611";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2695507-2695658";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2694644-2695367";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:14:"BMASAVP1_A2716";i:14;s:11:"Single gene";i:15;s:7:"1954699";i:16;s:20:"BMASAVP1_A2716(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3192158-3192289";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3192386-3192518";i:10;s:1:"+";i:11;s:14:"BMASAVP1_A3223";i:12;s:0:"";i:13;s:14:"BMASAVP1_A3223";i:14;s:6:"Operon";i:15;s:6:"264156";i:16;s:92:"BMASAVP1_A3223;BMASAVP1_A3224(thiO);BMASAVP1_A3225;BMASAVP1_A3226(thiG);BMASAVP1_A3227(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3265642-3265751";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3266017-3267136";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:14:"BMASAVP1_A3309";i:14;s:6:"Operon";i:15;s:6:"264177";i:16;s:41:"BMASAVP1_A3309(gcvT);BMASAVP1_A3310(gcvH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3265784-3265920";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3266017-3267136";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:14:"BMASAVP1_A3309";i:14;s:6:"Operon";i:15;s:6:"264177";i:16;s:41:"BMASAVP1_A3309(gcvT);BMASAVP1_A3310(gcvH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008785.1";i:2;s:38:"Burkholderia mallei SAVP1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3382134-3382273";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3380677-3382099";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:14:"BMASAVP1_A3417";i:14;s:11:"Single gene";i:15;s:7:"1954511";i:16;s:20:"BMASAVP1_A3417(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
