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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
75909-76183
(+)
cobalamin
76274-77156 (+)
Aave_0068
Precorrin-4 C11-methyltransferase (33)
Aave_0068
Single gene
DOOR ID:
1945283
Aave_0068
View Structure
2
236385-236499
(+)
SAH
236528-239252 (+)
Aave_0214
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Aave_0214
Single gene
DOOR ID:
1945338
Aave_0214
View Structure
3
897850-897976
(+)
TPP
898142-899996 (+)
Aave_0829
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Aave_0829
Single gene
DOOR ID:
1945527
Aave_0829
View Structure
4
1702222-1702487
(+)
cobalamin
1702660-1704442 (+)
Aave_1537
TonB-dependent receptor
Aave_1537
Operon
DOOR ID:
259007
Aave_1537,
Aave_1538,
Aave_1539,
Aave_1540,
Aave_1541,
Aave_1542
View Structure
5
3298357-3298515
(+)
ZMP-ZTP
3298553-3299798 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Aave_2992
Operon
DOOR ID:
259306
Aave_2992
(glyA)
,
Aave_2993
(nrdR)
View Structure
6
3381740-3381839
(+)
TPP
3381910-3383029 (+)
Aave_3068
Glycine oxidase (9)
Aave_3068
Operon
DOOR ID:
259322
Aave_3068,
Aave_3069,
Aave_3070
(thiG)
,
Aave_3071
View Structure
7
3470552-3470649
(+)
glycine
3470866-3471997 (+)
Aave_3145
Glycine cleavage system T protein
Aave_3145
Single gene
DOOR ID:
1946293
Aave_3145
View Structure
8
3470669-3470801
(+)
glycine
3470866-3471997 (+)
Aave_3145
Glycine cleavage system T protein
Aave_3145
Single gene
DOOR ID:
1946293
Aave_3145
View Structure
9
3498187-3498256
(-)
fluoride
3496196-3497366 (+)
Aave_3167
Aminotransferase
Aave_3167
Operon
DOOR ID:
259343
Aave_3166,
Aave_3167
View Structure
10
4511862-4511958
(-)
SAH
4510366-4511794 (-)
Aave_4060
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Aave_4060
Single gene
DOOR ID:
1946631
Aave_4060
View Structure
11
5005957-5006066
(+)
glycine
5006153-5007473 (+)
Aave_4507
D-amino acid dehydrogenase small subunit
Aave_4507
Single gene
DOOR ID:
1946781
Aave_4507
View Structure
12
5017644-5017735
(-)
TPP
5016456-5017551 (-)
Aave_4517
Putative acyl protein synthase/acyl-CoA reductase-like protein
Aave_4517
Operon
DOOR ID:
259623
Aave_4514,
Aave_4515,
Aave_4516,
Aave_4517
View Structure
13
5334187-5334375
(-)
yybP-ykoY
5333600-5334179 (-)
Aave_4779
Aave_4779
Single gene
DOOR ID:
1946902
Aave_4779
View Structure
Genome:
Acidovorax citrulli AAC00-1
(
NC_008752.1
);
Phylum:
Betaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1702222-1702487";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1702660-1704442";i:10;s:1:"+";i:11;s:9:"Aave_1537";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Aave_1537";i:14;s:6:"Operon";i:15;s:6:"259007";i:16;s:59:"Aave_1537;Aave_1538;Aave_1539;Aave_1540;Aave_1541;Aave_1542";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3298357-3298515";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3298553-3299798";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Aave_2992";i:14;s:6:"Operon";i:15;s:6:"259306";i:16;s:31:"Aave_2992(glyA);Aave_2993(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3381740-3381839";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3381910-3383029";i:10;s:1:"+";i:11;s:9:"Aave_3068";i:12;s:19:"Glycine oxidase (9)";i:13;s:9:"Aave_3068";i:14;s:6:"Operon";i:15;s:6:"259322";i:16;s:45:"Aave_3068;Aave_3069;Aave_3070(thiG);Aave_3071";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3470552-3470649";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3470866-3471997";i:10;s:1:"+";i:11;s:9:"Aave_3145";i:12;s:33:"Glycine cleavage system T protein";i:13;s:9:"Aave_3145";i:14;s:11:"Single gene";i:15;s:7:"1946293";i:16;s:9:"Aave_3145";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3470669-3470801";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3470866-3471997";i:10;s:1:"+";i:11;s:9:"Aave_3145";i:12;s:33:"Glycine cleavage system T protein";i:13;s:9:"Aave_3145";i:14;s:11:"Single gene";i:15;s:7:"1946293";i:16;s:9:"Aave_3145";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3498187-3498256";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3496196-3497366";i:10;s:1:"+";i:11;s:9:"Aave_3167";i:12;s:17:"Aminotransferase ";i:13;s:9:"Aave_3167";i:14;s:6:"Operon";i:15;s:6:"259343";i:16;s:19:"Aave_3166;Aave_3167";i:17;s:33:"biosynthetic process [GO:0009058]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4511862-4511958";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4510366-4511794";i:10;s:1:"-";i:11;s:9:"Aave_4060";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Aave_4060";i:14;s:11:"Single gene";i:15;s:7:"1946631";i:16;s:9:"Aave_4060";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5005957-5006066";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"5006153-5007473";i:10;s:1:"+";i:11;s:9:"Aave_4507";i:12;s:41:"D-amino acid dehydrogenase small subunit ";i:13;s:9:"Aave_4507";i:14;s:11:"Single gene";i:15;s:7:"1946781";i:16;s:9:"Aave_4507";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5017644-5017735";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5016456-5017551";i:10;s:1:"-";i:11;s:9:"Aave_4517";i:12;s:62:"Putative acyl protein synthase/acyl-CoA reductase-like protein";i:13;s:9:"Aave_4517";i:14;s:6:"Operon";i:15;s:6:"259623";i:16;s:39:"Aave_4514;Aave_4515;Aave_4516;Aave_4517";i:17;s:28:"bioluminescence [GO:0008218]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008752.1";i:2;s:28:"Acidovorax citrulli AAC00-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5334187-5334375";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5333600-5334179";i:10;s:1:"-";i:11;s:9:"Aave_4779";i:12;s:0:"";i:13;s:9:"Aave_4779";i:14;s:11:"Single gene";i:15;s:7:"1946902";i:16;s:9:"Aave_4779";i:17;s:0:"";i:18;s:15:"View Structure ";}}
