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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
268441-268574
(+)
MOCO
269639-270116 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Sputw3181_0244
Operon
DOOR ID:
257362
Sputw3181_0243
(moaA)
,
Sputw3181_0244
(moaC)
,
Sputw3181_0245,
Sputw3181_0246,
Sputw3181_0247,
Sputw3181_0248,
Sputw3181_0249
View Structure
2
424942-424989
(+)
mini-ykkC
425008-425323 (+)
sugE
YE0359
Operon
DOOR ID:
397806
ABAYE0358,
ABAYE0359
View Structure
3
852468-852702
(+)
cobalamin
852809-854771 (+)
Sputw3181_0767
Sputw3181_0767
Single gene
DOOR ID:
1942566
Sputw3181_0767
View Structure
4
899407-899536
(+)
glycine
899726-901085 (+)
Sputw3181_0800
Sputw3181_0800
Single gene
DOOR ID:
1942584
Sputw3181_0800
View Structure
5
1122774-1122960
(+)
cobalamin
1123059-1123941 (+)
Sputw3181_0984
Sputw3181_0984
Operon
DOOR ID:
257481
Sputw3181_0984,
Sputw3181_0985,
Sputw3181_0986
(cobT)
View Structure
6
1692555-1692751
(+)
lysine
1692831-1694400 (+)
Sputw3181_1499
Sputw3181_1499
Single gene
DOOR ID:
1942866
Sputw3181_1499
View Structure
7
2401258-2401356
(-)
TPP
2398936-2401057 (-)
Sputw3181_2086
Sputw3181_2086
Operon
DOOR ID:
257687
Sputw3181_2081
(thiH)
,
Sputw3181_2082
(thiG)
,
Sputw3181_2083,
Sputw3181_2084,
Sputw3181_2085,
Sputw3181_2086
View Structure
8
2728363-2728490
(-)
TPP
2726118-2728308 (-)
Sputw3181_2365
Sputw3181_2365
Single gene
DOOR ID:
1943285
Sputw3181_2365
View Structure
9
3722933-3723036
(+)
yybP-ykoY
3723119-3723674 (+)
Sputw3181_3259
Sputw3181_3259
Single gene
DOOR ID:
1943682
Sputw3181_3259
View Structure
10
3966251-3966333
(-)
c-di-GMP-I
3965666-3966167 (-)
Sputw3181_3484
Sputw3181_3484
single gene
DOOR ID:
1943795
Sputw3181_3484
View Structure
11
3975447-3975621
(-)
lysine
3973943-3975299 (-)
Sputw3181_3491
Sputw3181_3491
Single gene
DOOR ID:
1943800
Sputw3181_3491
View Structure
12
4519600-4519825
(+)
FMN
4520016-4520670 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Sputw3181_3938
Single gene
DOOR ID:
1943995
Sputw3181_3938
(ribB)
View Structure
Genome:
Shewanella sp. W3-18-1
(
NC_008750.1
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008750.1";i:2;s:23:"Shewanella sp. W3-18-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"268441-268574";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"269639-270116";i:10;s:1:"+";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:14:"Sputw3181_0244";i:14;s:6:"Operon";i:15;s:6:"257362";i:16;s:116:"Sputw3181_0243(moaA);Sputw3181_0244(moaC);Sputw3181_0245;Sputw3181_0246;Sputw3181_0247;Sputw3181_0248;Sputw3181_0249";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008750.1";i:2;s:23:"Shewanella sp. W3-18-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"424942-424989";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"425008-425323";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:6:"YE0359";i:14;s:6:"Operon";i:15;s:6:"397806";i:16;s:19:"ABAYE0358;ABAYE0359";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008750.1";i:2;s:23:"Shewanella sp. W3-18-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"852468-852702";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"852809-854771";i:10;s:1:"+";i:11;s:14:"Sputw3181_0767";i:12;s:0:"";i:13;s:14:"Sputw3181_0767";i:14;s:11:"Single gene";i:15;s:7:"1942566";i:16;s:14:"Sputw3181_0767";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008750.1";i:2;s:23:"Shewanella sp. 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W3-18-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2728363-2728490";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2726118-2728308";i:10;s:1:"-";i:11;s:14:"Sputw3181_2365";i:12;s:0:"";i:13;s:14:"Sputw3181_2365";i:14;s:11:"Single gene";i:15;s:7:"1943285";i:16;s:14:"Sputw3181_2365";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008750.1";i:2;s:23:"Shewanella sp. W3-18-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3722933-3723036";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3723119-3723674";i:10;s:1:"+";i:11;s:14:"Sputw3181_3259";i:12;s:0:"";i:13;s:14:"Sputw3181_3259";i:14;s:11:"Single gene";i:15;s:7:"1943682";i:16;s:14:"Sputw3181_3259";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008750.1";i:2;s:23:"Shewanella sp. 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W3-18-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4519600-4519825";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4520016-4520670";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:14:"Sputw3181_3938";i:14;s:11:"Single gene";i:15;s:7:"1943995";i:16;s:20:"Sputw3181_3938(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}
