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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
750460-750544
(+)
TPP
750551-751568 (+)
Mvan_0708
Glycine oxidase (9)
Mvan_0708
Operon
DOOR ID:
255205
Mvan_0708,
Mvan_0709,
Mvan_0710
(thiG)
,
Mvan_0711,
Mvan_0712,
Mvan_0713,
Mvan_0714,
Mvan_0715,
Mvan_0716
View Structure
2
767963-768072
(-)
TPP
765587-766424 (-)
Mvan_0724
Phosphomethylpyrimidine kinase
Mvan_0724
Operon
DOOR ID:
255207
Mvan_0720,
Mvan_0721,
Mvan_0722,
Mvan_0723,
Mvan_0724,
Mvan_0725
View Structure
3
851320-851388
(-)
ykkC-III
850150-851308 (-)
Mvan_0814
Mvan_0814
operon
DOOR ID:
255224
Mvan_0812,
Mvan_0813,
Mvan_0814
View Structure
4
851507-851616
(+)
ykkC-yxkD
851639-853163 (+)
Mvan_0815
Na+/solute symporter
Mvan_0815
Operon
DOOR ID:
255225
Mvan_0815,
Mvan_0816
View Structure
5
1175420-1175532
(-)
SAM-IV
1173935-1175390 (-)
Mvan_1105
ADP-ribosylation/Crystallin J1
Mvan_1105
Operon
DOOR ID:
255292
Mvan_1104,
Mvan_1105
View Structure
6
1643626-1643745
(-)
SAM-IV
1642240-1643584 (-)
Mvan_1554
O-acetylhomoserine sulfhydrolase (9)
Mvan_1554
Operon
DOOR ID:
255393
Mvan_1552,
Mvan_1553
(metX)
,
Mvan_1554
View Structure
7
3330502-3330600
(-)
glycine
3327510-3330363 (-)
Mvan_3131
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Mvan_3131
Operon
DOOR ID:
255740
Mvan_3130,
Mvan_3131
View Structure
8
3691254-3691344
(-)
SAH
3687483-3691239 (-)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Mvan_3474
Single gene
DOOR ID:
1939833
Mvan_3474
(metH)
View Structure
9
5402727-5402940
(+)
ydaO-yuaA
5402949-5404284 (+)
Mvan_5049
FHA domain containing protein
Mvan_5049
Single gene
DOOR ID:
1940370
Mvan_5049
View Structure
10
5857482-5857601
(-)
SAH
5856378-5857017 (-)
Mvan_5474
Two component transcriptional regulator; LuxR family
Mvan_5474
Operon
DOOR ID:
256253
Mvan_5474,
Mvan_5475,
Mvan_5476
View Structure
Genome:
Mycobacterium vanbaalenii PYR-1
(
NC_008726.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"750460-750544";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"750551-751568";i:10;s:1:"+";i:11;s:9:"Mvan_0708";i:12;s:19:"Glycine oxidase (9)";i:13;s:9:"Mvan_0708";i:14;s:6:"Operon";i:15;s:6:"255205";i:16;s:95:"Mvan_0708;Mvan_0709;Mvan_0710(thiG);Mvan_0711;Mvan_0712;Mvan_0713;Mvan_0714;Mvan_0715;Mvan_0716";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"767963-768072";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"765587-766424";i:10;s:1:"-";i:11;s:9:"Mvan_0724";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:9:"Mvan_0724";i:14;s:6:"Operon";i:15;s:6:"255207";i:16;s:59:"Mvan_0720;Mvan_0721;Mvan_0722;Mvan_0723;Mvan_0724;Mvan_0725";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"851320-851388";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:13:"850150-851308";i:10;s:1:"-";i:11;s:9:"Mvan_0814";i:12;s:0:"";i:13;s:9:"Mvan_0814";i:14;s:6:"operon";i:15;s:6:"255224";i:16;s:29:"Mvan_0812;Mvan_0813;Mvan_0814";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"851507-851616";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:13:"851639-853163";i:10;s:1:"+";i:11;s:9:"Mvan_0815";i:12;s:20:"Na+/solute symporter";i:13;s:9:"Mvan_0815";i:14;s:6:"Operon";i:15;s:6:"255225";i:16;s:19:"Mvan_0815;Mvan_0816";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1175420-1175532";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1173935-1175390";i:10;s:1:"-";i:11;s:9:"Mvan_1105";i:12;s:30:"ADP-ribosylation/Crystallin J1";i:13;s:9:"Mvan_1105";i:14;s:6:"Operon";i:15;s:6:"255292";i:16;s:19:"Mvan_1104;Mvan_1105";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1643626-1643745";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1642240-1643584";i:10;s:1:"-";i:11;s:9:"Mvan_1554";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:9:"Mvan_1554";i:14;s:6:"Operon";i:15;s:6:"255393";i:16;s:35:"Mvan_1552;Mvan_1553(metX);Mvan_1554";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3330502-3330600";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3327510-3330363";i:10;s:1:"-";i:11;s:9:"Mvan_3131";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Mvan_3131";i:14;s:6:"Operon";i:15;s:6:"255740";i:16;s:19:"Mvan_3130;Mvan_3131";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3691254-3691344";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3687483-3691239";i:10;s:1:"-";i:11;s:4:"metH";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Mvan_3474";i:14;s:11:"Single gene";i:15;s:7:"1939833";i:16;s:15:"Mvan_3474(metH)";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5402727-5402940";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"5402949-5404284";i:10;s:1:"+";i:11;s:9:"Mvan_5049";i:12;s:29:"FHA domain containing protein";i:13;s:9:"Mvan_5049";i:14;s:11:"Single gene";i:15;s:7:"1940370";i:16;s:9:"Mvan_5049";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008726.1";i:2;s:32:"Mycobacterium vanbaalenii PYR-1 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5857482-5857601";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"5856378-5857017";i:10;s:1:"-";i:11;s:9:"Mvan_5474";i:12;s:52:"Two component transcriptional regulator; LuxR family";i:13;s:9:"Mvan_5474";i:14;s:6:"Operon";i:15;s:6:"256253";i:16;s:29:"Mvan_5474;Mvan_5475;Mvan_5476";i:17;s:152:"phosphorelay signal transduction system [GO:0000160]; regulation of transcription; DNA-templated [GO:0006355]; transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}}
