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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
421176-421367
(+)
ydaO-yuaA
421370-422165 (+)
AAur_0408
AAur_0408
Single gene
DOOR ID:
1937129
AAur_0408
View Structure
2
834348-834532
(-)
ydaO-yuaA
832179-833199 (-)
AAur_0800
Putative dolichyl-phosphate beta-glucosyltransferase
AAur_0800
Single gene
DOOR ID:
1937811
AAur_0800
View Structure
3
883426-883524
(+)
glycine
883675-885142 (+)
AAur_0842
Putative D-serine/D-alanine/glycine transporter
AAur_0842
Single gene
DOOR ID:
1938411
AAur_0842
View Structure
4
1042789-1042886
(+)
glycine
1043064-1045911 (+)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
AAur_0987
Operon
DOOR ID:
254275
AAur_0987
(gcvP)
,
AAur_0988
(gcvT)
View Structure
5
1078081-1078321
(+)
ydaO-yuaA
1078325-1079162 (+)
AAur_1018
M23 peptidase domain protein
AAur_1018
Single gene
DOOR ID:
1937772
AAur_1018
View Structure
6
1079302-1079469
(+)
ydaO-yuaA
1079807-1080596 (+)
AAur_1019
AAur_1019
Single gene
DOOR ID:
1937551
AAur_1019
View Structure
7
1118155-1118274
(-)
SAM-IV
1117808-1118138 (-)
AAur_1052
AAur_1052
Single gene
DOOR ID:
1938167
AAur_1052
View Structure
8
1308906-1308991
(+)
ZMP-ZTP
1309107-1310400 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
AAur_1227
Operon
DOOR ID:
254328
AAur_1227
(glyA)
,
AAur_1228,
AAur_1229,
AAur_1230,
AAur_1231
View Structure
9
1618337-1618453
(+)
SAM-IV
1618468-1619590 (+)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
AAur_1475
Single gene
DOOR ID:
1938114
AAur_1475
(metX)
View Structure
10
1993260-1993414
(+)
FMN
1993503-1994208 (+)
AAur_1825
Putative nicotinamide mononucleotide transporter PnuC
AAur_1825
Operon
DOOR ID:
254445
AAur_1825,
AAur_1826
(ribD)
,
AAur_1827
(ribE)
View Structure
11
2561383-2561433
(-)
glutamine
2559725-2561228 (-)
AAur_2323
Putative iron-sulfur cluster-binding protein; rieske family
AAur_2323
Single gene
DOOR ID:
1938481
AAur_2323
View Structure
12
2604169-2604267
(-)
TPP
2601944-2602265 (-)
rplU
50S ribosomal protein L21
AAur_2367
Single gene
DOOR ID:
1937754
AAur_2367
(rplU)
View Structure
13
2690644-2690751
(+)
TPP
2692597-2693320 (-)
AAur_2456
AAur_2456
Single gene
DOOR ID:
1937644
AAur_2456
View Structure
14
2904762-2904875
(+)
SAM-IV
2904906-2906316 (+)
AAur_2646
Aminotransferase; class V protein
AAur_2646
Single gene
DOOR ID:
1938395
AAur_2646
View Structure
15
2949169-2949262
(-)
SAH
2947953-2948202 (+)
AAur_2682
Transcriptional regulator WhiB
AAur_2682
Single gene
DOOR ID:
1937329
AAur_2682
View Structure
16
3045073-3045191
(-)
TPP
3043578-3043815 (-)
thiS
Thiamine biosynthesis protein ThiS
AAur_2763
Operon
DOOR ID:
254643
AAur_2761,
AAur_2762
(thiG)
,
AAur_2763
(thiS)
,
AAur_2764
(thiO)
View Structure
17
3791746-3791855
(-)
SAM-IV
3789146-3790562 (-)
AAur_3439
Putative monooxygenase
AAur_3439
Operon
DOOR ID:
254799
AAur_3435,
AAur_3436,
AAur_3437,
AAur_3438,
AAur_3439,
AAur_3440
View Structure
18
3894383-3894448
(+)
ykkC-III
3894457-3894772 (+)
AAur_3544
AAur_3544
operon
DOOR ID:
254817
AAur_3544,
AAur_3545
View Structure
19
4015360-4015471
(+)
SAM-IV
4015484-4015751 (+)
AAur_3662
AAur_3662
Operon
DOOR ID:
254843
AAur_3662,
AAur_3663,
AAur_3664
(metB)
,
AAur_3666
View Structure
20
4027804-4027940
(-)
TPP
4027105-4027726 (-)
AAur_3673
Putative integral membrane protein
AAur_3673
Operon
DOOR ID:
254845
AAur_3670,
AAur_3672,
AAur_3673
View Structure
21
4242499-4242644
(+)
ydaO-yuaA
4242658-4243963 (+)
AAur_3868
AAur_3868
Single gene
DOOR ID:
1938193
AAur_3868
View Structure
22
4380689-4380787
(-)
glycine
4377688-4380553 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
AAur_4007
Operon
DOOR ID:
254910
AAur_4004
(glyA)
,
AAur_4005
(gcvH)
,
AAur_4006
(gcvT)
,
AAur_4007
(gcvP)
View Structure
Genome:
Arthrobacter aurescens TC1
(
NC_008711.1
);
Phylum:
Actinobacteria
a:23:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"421176-421367";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"421370-422165";i:10;s:1:"+";i:11;s:9:"AAur_0408";i:12;s:0:"";i:13;s:9:"AAur_0408";i:14;s:11:"Single gene";i:15;s:7:"1937129";i:16;s:9:"AAur_0408";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"834348-834532";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"832179-833199";i:10;s:1:"-";i:11;s:9:"AAur_0800";i:12;s:52:"Putative dolichyl-phosphate beta-glucosyltransferase";i:13;s:9:"AAur_0800";i:14;s:11:"Single gene";i:15;s:7:"1937811";i:16;s:9:"AAur_0800";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"883426-883524";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"883675-885142";i:10;s:1:"+";i:11;s:9:"AAur_0842";i:12;s:47:"Putative D-serine/D-alanine/glycine transporter";i:13;s:9:"AAur_0842";i:14;s:11:"Single gene";i:15;s:7:"1938411";i:16;s:9:"AAur_0842";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1042789-1042886";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1043064-1045911";i:10;s:1:"+";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"AAur_0987";i:14;s:6:"Operon";i:15;s:6:"254275";i:16;s:31:"AAur_0987(gcvP);AAur_0988(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1078081-1078321";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1078325-1079162";i:10;s:1:"+";i:11;s:9:"AAur_1018";i:12;s:28:"M23 peptidase domain protein";i:13;s:9:"AAur_1018";i:14;s:11:"Single gene";i:15;s:7:"1937772";i:16;s:9:"AAur_1018";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1079302-1079469";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1079807-1080596";i:10;s:1:"+";i:11;s:9:"AAur_1019";i:12;s:0:"";i:13;s:9:"AAur_1019";i:14;s:11:"Single gene";i:15;s:7:"1937551";i:16;s:9:"AAur_1019";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1118155-1118274";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1117808-1118138";i:10;s:1:"-";i:11;s:9:"AAur_1052";i:12;s:0:"";i:13;s:9:"AAur_1052";i:14;s:11:"Single gene";i:15;s:7:"1938167";i:16;s:9:"AAur_1052";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1308906-1308991";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1309107-1310400";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"AAur_1227";i:14;s:6:"Operon";i:15;s:6:"254328";i:16;s:55:"AAur_1227(glyA);AAur_1228;AAur_1229;AAur_1230;AAur_1231";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1618337-1618453";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1618468-1619590";i:10;s:1:"+";i:11;s:4:"metX";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"AAur_1475";i:14;s:11:"Single gene";i:15;s:7:"1938114";i:16;s:15:"AAur_1475(metX)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1993260-1993414";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1993503-1994208";i:10;s:1:"+";i:11;s:9:"AAur_1825";i:12;s:53:"Putative nicotinamide mononucleotide transporter PnuC";i:13;s:9:"AAur_1825";i:14;s:6:"Operon";i:15;s:6:"254445";i:16;s:41:"AAur_1825;AAur_1826(ribD);AAur_1827(ribE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2561383-2561433";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"2559725-2561228";i:10;s:1:"-";i:11;s:9:"AAur_2323";i:12;s:59:"Putative iron-sulfur cluster-binding protein; rieske family";i:13;s:9:"AAur_2323";i:14;s:11:"Single gene";i:15;s:7:"1938481";i:16;s:9:"AAur_2323";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2604169-2604267";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2601944-2602265";i:10;s:1:"-";i:11;s:4:"rplU";i:12;s:25:"50S ribosomal protein L21";i:13;s:9:"AAur_2367";i:14;s:11:"Single gene";i:15;s:7:"1937754";i:16;s:15:"AAur_2367(rplU)";i:17;s:24:"translation [GO:0006412]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2690644-2690751";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2692597-2693320";i:10;s:1:"-";i:11;s:9:"AAur_2456";i:12;s:0:"";i:13;s:9:"AAur_2456";i:14;s:11:"Single gene";i:15;s:7:"1937644";i:16;s:9:"AAur_2456";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008711.1";i:2;s:26:"Arthrobacter aurescens TC1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2904762-2904875";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2904906-2906316";i:10;s:1:"+";i:11;s:9:"AAur_2646";i:12;s:33:"Aminotransferase; 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