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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
462388-462531
(+)
TPP
462609-464580 (+)
Ping_0360
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Ping_0360
Operon
DOOR ID:
253372
Ping_0360,
Ping_0361,
Ping_0362,
Ping_0363,
Ping_0364
(thiG)
,
Ping_0365,
Ping_0366
View Structure
2
490685-490779
(+)
TPP
490822-491821 (+)
tbpA
Thiamine ABC transporter; periplasmic binding protein
Ping_0385
Operon
DOOR ID:
253375
Ping_0385
(tbpA)
,
Ping_0386
(thiP)
View Structure
3
1867279-1867369
(+)
c-di-GMP-I
1867443-1868922 (+)
Ping_1521
Uncharacterized protein
Ping_1521
single gene
DOOR ID:
1935848
Ping_1521
View Structure
4
2652780-2652936
(-)
MOCO
2650886-2651366 (-)
Ping_2176
Ferredoxin-type protein NapF
Ping_2176
Operon
DOOR ID:
253646
Ping_2175
(napD)
,
Ping_2176
View Structure
5
2895324-2895423
(-)
TPP
2894399-2895251 (-)
Ping_2378
Phosphomethylpyrimidine kinase
Ping_2378
Operon
DOOR ID:
253683
Ping_2374,
Ping_2375,
Ping_2376,
Ping_2377,
Ping_2378
View Structure
6
3752507-3752582
(-)
c-di-GMP-I
3752076-3752472 (+)
Ping_3055
Uncharacterized protein
Ping_3055
single gene
DOOR ID:
1936642
Ping_3055
View Structure
7
3759037-3759112
(-)
c-di-GMP-I
3758183-3758996 (-)
Ping_3061
Uncharacterized protein
Ping_3061
operon
DOOR ID:
253792
Ping_3060,
Ping_3061
View Structure
8
3759509-3759584
(-)
c-di-GMP-I
3758183-3758996 (-)
Ping_3061
Uncharacterized protein
Ping_3061
operon
DOOR ID:
253792
Ping_3060,
Ping_3061
View Structure
9
4128360-4128531
(+)
cobalamin
4128733-4130575 (+)
Ping_3340
TonB-dependent receptor; plug
Ping_3340
Operon
DOOR ID:
253842
Ping_3340,
Ping_3341,
Ping_3342
(fecD)
,
Ping_3343
View Structure
Genome:
Psychromonas ingrahamii 37
(
NC_008709.1
);
Phylum:
Gammaproteobacteria
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