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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
611439-611556
(+)
TPP
612571-612769 (+)
Mkms_0558
Thiamine biosynthesis protein ThiS
Mkms_0558
Operon
DOOR ID:
252210
Mkms_0557,
Mkms_0558,
Mkms_0559
(thiG)
,
Mkms_0560,
Mkms_0561,
Mkms_0562
View Structure
2
632434-632542
(-)
TPP
630984-631608 (-)
Mkms_0575
Mkms_0575
Operon
DOOR ID:
252213
Mkms_0572,
Mkms_0573,
Mkms_0574,
Mkms_0575,
Mkms_0576
View Structure
3
928799-928910
(-)
SAM-IV
928156-928768 (-)
Mkms_0848
Mkms_0848
Operon
DOOR ID:
252271
Mkms_0845,
Mkms_0846,
Mkms_0847,
Mkms_0848
View Structure
4
1311630-1311748
(-)
SAM-IV
1310279-1311587 (-)
Mkms_1225
O-acetylhomoserine sulfhydrolase (9)
Mkms_1225
Operon
DOOR ID:
252353
Mkms_1223,
Mkms_1224
(metX)
,
Mkms_1225
View Structure
5
1318302-1318365
(-)
ykkC-III
1317965-1318289 (-)
Mkms_1231
Mkms_1231
single gene
DOOR ID:
1934340
Mkms_1231
View Structure
6
3025146-3025244
(-)
glycine
3022131-3024978 (-)
Mkms_2884
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Mkms_2884
Single gene
DOOR ID:
1934666
Mkms_2884
View Structure
7
3370586-3370677
(-)
SAH
3366776-3370571 (-)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Mkms_3211
Operon
DOOR ID:
252782
Mkms_3207
(hisG)
,
Mkms_3208
(hisE)
,
Mkms_3209,
Mkms_3210,
Mkms_3211
(metH)
View Structure
8
4796679-4796883
(+)
ydaO-yuaA
4796892-4798194 (+)
Mkms_4566
Transglycosylase domain protein
Mkms_4566
Single gene
DOOR ID:
1934944
Mkms_4566
View Structure
9
5069208-5069330
(-)
AdoCbl
5068987-5069206 (-)
Mkms_4841
Mkms_4841
Operon
DOOR ID:
253149
Mkms_4839,
Mkms_4840,
Mkms_4841
View Structure
10
5599557-5599666
(-)
TPP
5597463-5598930 (-)
Mkms_5362
ABC transporter related protein
Mkms_5362
Operon
DOOR ID:
253272
Mkms_5360,
Mkms_5361,
Mkms_5362,
Mkms_5363
View Structure
Genome:
Mycobacterium sp. KMS
(
NC_008705.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"611439-611556";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"612571-612769";i:10;s:1:"+";i:11;s:9:"Mkms_0558";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Mkms_0558";i:14;s:6:"Operon";i:15;s:6:"252210";i:16;s:65:"Mkms_0557;Mkms_0558;Mkms_0559(thiG);Mkms_0560;Mkms_0561;Mkms_0562";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"632434-632542";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"630984-631608";i:10;s:1:"-";i:11;s:9:"Mkms_0575";i:12;s:0:"";i:13;s:9:"Mkms_0575";i:14;s:6:"Operon";i:15;s:6:"252213";i:16;s:49:"Mkms_0572;Mkms_0573;Mkms_0574;Mkms_0575;Mkms_0576";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"928799-928910";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"928156-928768";i:10;s:1:"-";i:11;s:9:"Mkms_0848";i:12;s:0:"";i:13;s:9:"Mkms_0848";i:14;s:6:"Operon";i:15;s:6:"252271";i:16;s:39:"Mkms_0845;Mkms_0846;Mkms_0847;Mkms_0848";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1311630-1311748";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1310279-1311587";i:10;s:1:"-";i:11;s:9:"Mkms_1225";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:9:"Mkms_1225";i:14;s:6:"Operon";i:15;s:6:"252353";i:16;s:35:"Mkms_1223;Mkms_1224(metX);Mkms_1225";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1318302-1318365";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1317965-1318289";i:10;s:1:"-";i:11;s:9:"Mkms_1231";i:12;s:0:"";i:13;s:9:"Mkms_1231";i:14;s:11:"single gene";i:15;s:7:"1934340";i:16;s:9:"Mkms_1231";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3025146-3025244";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3022131-3024978";i:10;s:1:"-";i:11;s:9:"Mkms_2884";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Mkms_2884";i:14;s:11:"Single gene";i:15;s:7:"1934666";i:16;s:9:"Mkms_2884";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3370586-3370677";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3366776-3370571";i:10;s:1:"-";i:11;s:4:"metH";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Mkms_3211";i:14;s:6:"Operon";i:15;s:6:"252782";i:16;s:67:"Mkms_3207(hisG);Mkms_3208(hisE);Mkms_3209;Mkms_3210;Mkms_3211(metH)";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4796679-4796883";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4796892-4798194";i:10;s:1:"+";i:11;s:9:"Mkms_4566";i:12;s:31:"Transglycosylase domain protein";i:13;s:9:"Mkms_4566";i:14;s:11:"Single gene";i:15;s:7:"1934944";i:16;s:9:"Mkms_4566";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5069208-5069330";i:6;s:1:"-";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:15:"5068987-5069206";i:10;s:1:"-";i:11;s:9:"Mkms_4841";i:12;s:0:"";i:13;s:9:"Mkms_4841";i:14;s:6:"Operon";i:15;s:6:"253149";i:16;s:29:"Mkms_4839;Mkms_4840;Mkms_4841";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008705.1";i:2;s:22:"Mycobacterium sp. KMS ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5599557-5599666";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5597463-5598930";i:10;s:1:"-";i:11;s:9:"Mkms_5362";i:12;s:31:"ABC transporter related protein";i:13;s:9:"Mkms_5362";i:14;s:6:"Operon";i:15;s:6:"253272";i:16;s:39:"Mkms_5360;Mkms_5361;Mkms_5362;Mkms_5363";i:17;s:0:"";i:18;s:15:"View Structure ";}}