Genome: Paracoccus denitrificans PD1222 chromosome II (NC_008687.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 111129-111259 (+)TPP111382-113182 (+)Pden_2944

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Pden_2944Single gene

DOOR ID: 1927266		Pden_2944 View Structure
2 155234-155429 (+)cobalamin155556-156567 (+)Pden_2980

Periplasmic binding protein		Pden_2980Operon

DOOR ID: 248066		Pden_2980,
Pden_2981,
Pden_2982,
Pden_2983,
Pden_2984		 View Structure
3 163337-163550 (-)cobalamin161391-163137 (-)Pden_2989

Anaerobic ribonucleoside-triphosphate reductase		Pden_2989Operon

DOOR ID: 248067		Pden_2987,
Pden_2988,
Pden_2989		 View Structure
4 822667-822798 (+)TPP822863-823505 (+)Pden_3673

Aminopyrimidine aminohydrolase 		Pden_3673Single gene

DOOR ID: 1927505		Pden_3673 View Structure
5 1566394-1566586 (+)cobalamin1566678-1566900 (+)Pden_4375

Ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit 		Pden_4375Operon

DOOR ID: 248343		Pden_4375,
Pden_4376 (nrdI),
Pden_4377,
Pden_4378 (nrdF)		 View Structure
6 1574718-1574933 (+)cobalamin1575067-1576975 (+)Pden_4382

TonB-dependent receptor		Pden_4382Operon

DOOR ID: 248344		Pden_4382,
Pden_4383,
Pden_4384,
Pden_4385		 View Structure