About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1260190-1260429
(+)
cobalamin
1260808-1262758 (+)
Cpha266_1115
TonB-dependent receptor
Cpha266_1115
Operon
DOOR ID:
247089
Cpha266_1115,
Cpha266_1116,
Cpha266_1117,
Cpha266_1118,
Cpha266_1119
(cobD)
,
Cpha266_1120,
Cpha266_1121,
Cpha266_1122,
Cpha266_1123
View Structure
2
2009901-2010009
(-)
SAM
2008495-2009788 (-)
Cpha266_1767
O-acetylhomoserine sulfhydrolase (9)
Cpha266_1767
Operon
DOOR ID:
247219
Cpha266_1766,
Cpha266_1767
View Structure
3
2029867-2030140
(-)
cobalamin
2026177-2029624 (-)
Cpha266_1782
Vitamin B12-dependent ribonucleotide reductase
Cpha266_1782
Single gene
DOOR ID:
1926032
Cpha266_1782
View Structure
4
2145138-2145261
(+)
TPP
2145317-2147018 (+)
Cpha266_1851
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Cpha266_1851
Single gene
DOOR ID:
1926052
Cpha266_1851
View Structure
Genome:
Chlorobium phaeobacteroides DSM 266
(
NC_008639.1
);
Phylum:
Bacteroidetes/Chlorobi group
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008639.1";i:2;s:36:"Chlorobium phaeobacteroides DSM 266 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1260190-1260429";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1260808-1262758";i:10;s:1:"+";i:11;s:12:"Cpha266_1115";i:12;s:23:"TonB-dependent receptor";i:13;s:12:"Cpha266_1115";i:14;s:6:"Operon";i:15;s:6:"247089";i:16;s:122:"Cpha266_1115;Cpha266_1116;Cpha266_1117;Cpha266_1118;Cpha266_1119(cobD);Cpha266_1120;Cpha266_1121;Cpha266_1122;Cpha266_1123";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008639.1";i:2;s:36:"Chlorobium phaeobacteroides DSM 266 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2009901-2010009";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2008495-2009788";i:10;s:1:"-";i:11;s:12:"Cpha266_1767";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:12:"Cpha266_1767";i:14;s:6:"Operon";i:15;s:6:"247219";i:16;s:25:"Cpha266_1766;Cpha266_1767";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008639.1";i:2;s:36:"Chlorobium phaeobacteroides DSM 266 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2029867-2030140";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2026177-2029624";i:10;s:1:"-";i:11;s:12:"Cpha266_1782";i:12;s:47:"Vitamin B12-dependent ribonucleotide reductase ";i:13;s:12:"Cpha266_1782";i:14;s:11:"Single gene";i:15;s:7:"1926032";i:16;s:12:"Cpha266_1782";i:17;s:67:"DNA biosynthetic process [GO:0071897]; DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008639.1";i:2;s:36:"Chlorobium phaeobacteroides DSM 266 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2145138-2145261";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2145317-2147018";i:10;s:1:"+";i:11;s:12:"Cpha266_1851";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"Cpha266_1851";i:14;s:11:"Single gene";i:15;s:7:"1926052";i:16;s:12:"Cpha266_1851";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}