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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
127044-127147
(-)
TPP
125854-126568 (-)
BAD_0090
Thiamine biosynthesis protein ThiF
BAD_0090
Single gene
DOOR ID:
1924631
BAD_0090
View Structure
2
922963-923040
(+)
fluoride
923044-923590 (+)
crcB2
Putative fluoride ion transporter CrcB
BAD_0734
Operon
DOOR ID:
246682
BAD_0734
(crcB2)
,
BAD_0735
(crcB3)
View Structure
3
1091573-1091676
(-)
TPP
1090145-1091111 (-)
BAD_0874
BAD_0874
Single gene
DOOR ID:
1924967
BAD_0874
View Structure
4
1156915-1157017
(+)
TPP
1157090-1158485 (+)
BAD_0932
Hypothetical transmembrane protein in xanthine/uracil permeases family
BAD_0932
Single gene
DOOR ID:
1924982
BAD_0932
View Structure
5
1177957-1178059
(-)
TPP
1177310-1177925 (-)
BAD_0950
BAD_0950
Single gene
DOOR ID:
1924994
BAD_0950
View Structure
6
1192429-1192535
(+)
TPP
1193396-1193765 (-)
BAD_0960
BAD_0960
Operon
DOOR ID:
246725
BAD_0960,
BAD_0961
(cbiO)
View Structure
7
1196856-1197008
(-)
FMN
1196223-1196787 (-)
BAD_0962
Riboflavin transporter
BAD_0962
Single gene
DOOR ID:
1925000
BAD_0962
View Structure
8
1416308-1416421
(+)
TPP
1417439-1418195 (+)
BAD_1145
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
BAD_1145
Single gene
DOOR ID:
1925066
BAD_1145
View Structure
9
1593537-1593628
(+)
TPP
1593667-1594378 (+)
BAD_1276
BAD_1276
Single gene
DOOR ID:
1925131
BAD_1276
View Structure
Genome:
Bifidobacterium adolescentis ATCC 15703
(
NC_008618.1
);
Phylum:
Actinobacteria
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