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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
140970-141190
(+)
cobalamin
141240-143616 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MUL_0138
Single gene
DOOR ID:
1922600
MUL_0138
(metE)
View Structure
2
290980-291193
(+)
ydaO-yuaA
291202-292066 (+)
rpfA
Resuscitation-promoting factor RpfA
MUL_0283
Single gene
DOOR ID:
1922664
MUL_0283
(rpfA)
View Structure
3
406792-406873
(+)
SAH
411027-411759 (+)
MUL_0396
MUL_0396
Operon
DOOR ID:
1177119
MUL_0396,
MUL_0397
View Structure
4
1553311-1553430
(-)
SAM-IV
1551920-1553270 (-)
metC
O-acetylhomoserine sulfhydrylase MetC
MUL_1438
Operon
DOOR ID:
1177290
MUL_1436,
MUL_1437
(metX)
,
MUL_1438
(metC)
View Structure
5
1645618-1645787
(+)
ykoK
1646072-1646306 (+)
MUL_1522
MUL_1522
Single gene
DOOR ID:
1923144
MUL_1522
View Structure
6
3045327-3045401
(+)
fluoride
3045589-3046669 (+)
MUL_2726
MUL_2726
Single gene
DOOR ID:
1923594
MUL_2726
View Structure
7
3132109-3132239
(-)
TPP
3130904-3131102 (-)
thiS
Thiamine biosynthesis protein ThiS
MUL_2804
Operon
DOOR ID:
1177509
MUL_2802,
MUL_2803
(thiG)
,
MUL_2804
(thiS)
,
MUL_2805
(thiO)
View Structure
8
3207195-3207260
(-)
ykkC-III
3205340-3206543 (+)
mce3R
MUL_2880
single gene
DOOR ID:
1923672
MUL_2880
(mce3R)
View Structure
9
3374093-3374190
(+)
glycine
3374382-3377220 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MUL_3050
Single gene
DOOR ID:
1923739
MUL_3050
(gcvB)
View Structure
10
3374191-3374316
(+)
glycine
3374382-3377220 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MUL_3050
Single gene
DOOR ID:
1923739
MUL_3050
(gcvB)
View Structure
11
3411396-3411572
(-)
ykoK
3409754-3410915 (-)
MUL_3074
PPE family protein
MUL_3074
Single gene
DOOR ID:
1923756
MUL_3074
View Structure
12
3995830-3995941
(-)
TPP
3994188-3995829 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
MUL_3600
Operon
DOOR ID:
1177612
MUL_3599
(thiD)
,
MUL_3600
(thiC)
View Structure
13
5325906-5326076
(-)
ykoK
5325391-5325574 (-)
MUL_4808
MUL_4808
Single gene
DOOR ID:
1924483
MUL_4808
View Structure
Genome:
Mycobacterium ulcerans Agy99
(
NC_008611.1
);
Phylum:
Actinobacteria
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gene";i:15;s:7:"1922600";i:16;s:14:"MUL_0138(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"290980-291193";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"291202-292066";i:10;s:1:"+";i:11;s:4:"rpfA";i:12;s:35:"Resuscitation-promoting factor RpfA";i:13;s:8:"MUL_0283";i:14;s:11:"Single gene";i:15;s:7:"1922664";i:16;s:14:"MUL_0283(rpfA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"406792-406873";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"411027-411759";i:10;s:1:"+";i:11;s:8:"MUL_0396";i:12;s:0:"";i:13;s:8:"MUL_0396";i:14;s:6:"Operon";i:15;s:7:"1177119";i:16;s:17:"MUL_0396;MUL_0397";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1553311-1553430";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1551920-1553270";i:10;s:1:"-";i:11;s:4:"metC";i:12;s:37:"O-acetylhomoserine sulfhydrylase MetC";i:13;s:8:"MUL_1438";i:14;s:6:"Operon";i:15;s:7:"1177290";i:16;s:38:"MUL_1436;MUL_1437(metX);MUL_1438(metC)";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1645618-1645787";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1646072-1646306";i:10;s:1:"+";i:11;s:8:"MUL_1522";i:12;s:0:"";i:13;s:8:"MUL_1522";i:14;s:11:"Single gene";i:15;s:7:"1923144";i:16;s:8:"MUL_1522";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3045327-3045401";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3045589-3046669";i:10;s:1:"+";i:11;s:8:"MUL_2726";i:12;s:0:"";i:13;s:8:"MUL_2726";i:14;s:11:"Single gene";i:15;s:7:"1923594";i:16;s:8:"MUL_2726";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3132109-3132239";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3130904-3131102";i:10;s:1:"-";i:11;s:4:"thiS";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:8:"MUL_2804";i:14;s:6:"Operon";i:15;s:7:"1177509";i:16;s:53:"MUL_2802;MUL_2803(thiG);MUL_2804(thiS);MUL_2805(thiO)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3207195-3207260";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"3205340-3206543";i:10;s:1:"+";i:11;s:5:"mce3R";i:12;s:0:"";i:13;s:8:"MUL_2880";i:14;s:11:"single gene";i:15;s:7:"1923672";i:16;s:15:"MUL_2880(mce3R)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3374093-3374190";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3374382-3377220";i:10;s:1:"+";i:11;s:4:"gcvB";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:8:"MUL_3050";i:14;s:11:"Single gene";i:15;s:7:"1923739";i:16;s:14:"MUL_3050(gcvB)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3374191-3374316";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3374382-3377220";i:10;s:1:"+";i:11;s:4:"gcvB";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:8:"MUL_3050";i:14;s:11:"Single gene";i:15;s:7:"1923739";i:16;s:14:"MUL_3050(gcvB)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3411396-3411572";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"3409754-3410915";i:10;s:1:"-";i:11;s:8:"MUL_3074";i:12;s:18:"PPE family protein";i:13;s:8:"MUL_3074";i:14;s:11:"Single gene";i:15;s:7:"1923756";i:16;s:8:"MUL_3074";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3995830-3995941";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3994188-3995829";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"MUL_3600";i:14;s:6:"Operon";i:15;s:7:"1177612";i:16;s:29:"MUL_3599(thiD);MUL_3600(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008611.1";i:2;s:29:"Mycobacterium ulcerans Agy99 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5325906-5326076";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"5325391-5325574";i:10;s:1:"-";i:11;s:8:"MUL_4808";i:12;s:0:"";i:13;s:8:"MUL_4808";i:14;s:11:"Single gene";i:15;s:7:"1924483";i:16;s:8:"MUL_4808";i:17;s:0:"";i:18;s:15:"View Structure ";}}
