RiboswitchDB

Genome: Francisella novicida U112 (NC_008601.1); Phylum: Gammaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

125776-125925 (-)

FMN

124587-125655 (-)

ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]

Operon

DOOR ID: 245170

FTN_0110,
FTN_0111 (ribH),
FTN_0112 (ribAB),
FTN_0113 (ribC),
FTN_0114 (ribD)

2

981617-981718 (-)

TPP

980935-981559 (-)

FTN_0924

Hypothetical membrane protein

Single gene

DOOR ID: 1920735

FTN_0924

3

1858905-1859096 (-)

lysine

1857485-1858841 (-)

lysC

Aspartokinase

Operon

DOOR ID: 245511

FTN_1725 (aspC),
FTN_1726,
FTN_1727 (dapD),
FTN_1728 (dapA),
FTN_1729 (dapB),
FTN_1730 (lysC)

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008601.1";i:2;s:26:"Francisella novicida U112 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"981617-981718";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"980935-981559";i:10;s:1:"-";i:11;s:8:"FTN_0924";i:12;s:29:"Hypothetical membrane protein";i:13;s:8:"FTN_0924";i:14;s:11:"Single gene";i:15;s:7:"1920735";i:16;s:8:"FTN_0924";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008601.1";i:2;s:26:"Francisella novicida U112 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1858905-1859096";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1857485-1858841";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:8:"FTN_1730";i:14;s:6:"Operon";i:15;s:6:"245511";i:16;s:83:"FTN_1725(aspC);FTN_1726;FTN_1727(dapD);FTN_1728(dapA);FTN_1729(dapB);FTN_1730(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure
";}}