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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
58984-59097
(-)
TPP
57211-58969 (-)
Acel_0052
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Acel_0052
Single gene
DOOR ID:
1912231
Acel_0052
View Structure
2
103256-103415
(+)
SAM
103431-104688 (+)
Acel_0100
L-threonine synthase
Acel_0100
Single gene
DOOR ID:
1912246
Acel_0100
View Structure
3
804061-804142
(-)
fluoride
802963-803926 (-)
Acel_0731
Respiratory-chain NADH dehydrogenase; subunit 1
Acel_0731
Operon
DOOR ID:
240570
Acel_0726,
Acel_0727,
Acel_0728,
Acel_0729,
Acel_0730,
Acel_0731
View Structure
4
805841-805902
(+)
fluoride
805916-807467 (+)
Acel_0734
DNA mismatch repair protein MutS domain protein
Acel_0734
Operon
DOOR ID:
240571
Acel_0734,
Acel_0735
View Structure
5
1044596-1044740
(-)
cobalamin
1043219-1044467 (-)
Acel_0946
LPXTG-motif cell wall anchor domain protein
Acel_0946
Operon
DOOR ID:
240618
Acel_0939,
Acel_0940,
Acel_0941,
Acel_0942,
Acel_0943,
Acel_0944,
Acel_0945,
Acel_0946
View Structure
6
1069182-1069310
(+)
ydaO-yuaA
1069322-1070360 (+)
Acel_0971
NLP/P60 protein
Acel_0971
Operon
DOOR ID:
240623
Acel_0971,
Acel_0972
View Structure
7
1089799-1089911
(-)
TPP
1088556-1089771 (-)
Acel_0989
Glycine oxidase (9)
Acel_0989
Operon
DOOR ID:
240627
Acel_0987
(thiG)
,
Acel_0988,
Acel_0989
View Structure
8
1364125-1364219
(-)
glycine
1361103-1363998 (-)
Acel_1222
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Acel_1222
Operon
DOOR ID:
240680
Acel_1221,
Acel_1222
View Structure
9
1422007-1422141
(-)
FMN
1420842-1421943 (-)
Acel_1274
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Acel_1274
Operon
DOOR ID:
240691
Acel_1271
(ribH)
,
Acel_1272,
Acel_1273,
Acel_1274
View Structure
10
1939207-1939426
(+)
cobalamin
1939463-1941818 (+)
Acel_1723
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Acel_1723
Single gene
DOOR ID:
1912761
Acel_1723
View Structure
11
1942077-1942287
(+)
cobalamin
1942584-1944930 (+)
Acel_1724
Ribonucleoside-diphosphate reductase
Acel_1724
Operon
DOOR ID:
240791
Acel_1724,
Acel_1725
View Structure
12
2090037-2090130
(-)
glycine
2088751-2089912 (-)
Acel_1847
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Acel_1847
Single gene
DOOR ID:
1912804
Acel_1847
View Structure
13
2229255-2229380
(+)
yybP-ykoY
2229426-2230458 (+)
Acel_1963
Sodium/calcium exchanger membrane region
Acel_1963
Single gene
DOOR ID:
1912844
Acel_1963
View Structure
14
2372860-2373007
(-)
ydaO-yuaA
2371727-2372855 (-)
Acel_2096
NLP/P60 protein
Acel_2096
Single gene
DOOR ID:
1912900
Acel_2096
View Structure
Genome:
Acidothermus cellulolyticus 11B
(
NC_008578.1
);
Phylum:
Actinobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"103256-103415";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"103431-104688";i:10;s:1:"+";i:11;s:9:"Acel_0100";i:12;s:21:"L-threonine synthase ";i:13;s:9:"Acel_0100";i:14;s:11:"Single gene";i:15;s:7:"1912246";i:16;s:9:"Acel_0100";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"804061-804142";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"802963-803926";i:10;s:1:"-";i:11;s:9:"Acel_0731";i:12;s:47:"Respiratory-chain NADH dehydrogenase; subunit 1";i:13;s:9:"Acel_0731";i:14;s:6:"Operon";i:15;s:6:"240570";i:16;s:59:"Acel_0726;Acel_0727;Acel_0728;Acel_0729;Acel_0730;Acel_0731";i:17;s:40:"oxidation-reduction process [GO:0055114]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"805841-805902";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"805916-807467";i:10;s:1:"+";i:11;s:9:"Acel_0734";i:12;s:47:"DNA mismatch repair protein MutS domain protein";i:13;s:9:"Acel_0734";i:14;s:6:"Operon";i:15;s:6:"240571";i:16;s:19:"Acel_0734;Acel_0735";i:17;s:28:"mismatch repair [GO:0006298]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1044596-1044740";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1043219-1044467";i:10;s:1:"-";i:11;s:9:"Acel_0946";i:12;s:43:"LPXTG-motif cell wall anchor domain protein";i:13;s:9:"Acel_0946";i:14;s:6:"Operon";i:15;s:6:"240618";i:16;s:79:"Acel_0939;Acel_0940;Acel_0941;Acel_0942;Acel_0943;Acel_0944;Acel_0945;Acel_0946";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1069182-1069310";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1069322-1070360";i:10;s:1:"+";i:11;s:9:"Acel_0971";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Acel_0971";i:14;s:6:"Operon";i:15;s:6:"240623";i:16;s:19:"Acel_0971;Acel_0972";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1089799-1089911";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1088556-1089771";i:10;s:1:"-";i:11;s:9:"Acel_0989";i:12;s:19:"Glycine oxidase (9)";i:13;s:9:"Acel_0989";i:14;s:6:"Operon";i:15;s:6:"240627";i:16;s:35:"Acel_0987(thiG);Acel_0988;Acel_0989";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1364125-1364219";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1361103-1363998";i:10;s:1:"-";i:11;s:9:"Acel_1222";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Acel_1222";i:14;s:6:"Operon";i:15;s:6:"240680";i:16;s:19:"Acel_1221;Acel_1222";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1422007-1422141";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1420842-1421943";i:10;s:1:"-";i:11;s:9:"Acel_1274";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Acel_1274";i:14;s:6:"Operon";i:15;s:6:"240691";i:16;s:45:"Acel_1271(ribH);Acel_1272;Acel_1273;Acel_1274";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1939207-1939426";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1939463-1941818";i:10;s:1:"+";i:11;s:9:"Acel_1723";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"Acel_1723";i:14;s:11:"Single gene";i:15;s:7:"1912761";i:16;s:9:"Acel_1723";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1942077-1942287";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1942584-1944930";i:10;s:1:"+";i:11;s:9:"Acel_1724";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"Acel_1724";i:14;s:6:"Operon";i:15;s:6:"240791";i:16;s:19:"Acel_1724;Acel_1725";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2090037-2090130";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2088751-2089912";i:10;s:1:"-";i:11;s:9:"Acel_1847";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Acel_1847";i:14;s:11:"Single gene";i:15;s:7:"1912804";i:16;s:9:"Acel_1847";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2229255-2229380";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2229426-2230458";i:10;s:1:"+";i:11;s:9:"Acel_1963";i:12;s:40:"Sodium/calcium exchanger membrane region";i:13;s:9:"Acel_1963";i:14;s:11:"Single gene";i:15;s:7:"1912844";i:16;s:9:"Acel_1963";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008578.1";i:2;s:32:"Acidothermus cellulolyticus 11B ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2372860-2373007";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2371727-2372855";i:10;s:1:"-";i:11;s:9:"Acel_2096";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Acel_2096";i:14;s:11:"Single gene";i:15;s:7:"1912900";i:16;s:9:"Acel_2096";i:17;s:0:"";i:18;s:15:"View Structure ";}}