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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
152927-153159
(-)
FMN
152061-152715 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Shewana3_0134
Single gene
DOOR ID:
1910261
Shewana3_0134
(ribB)
View Structure
2
309677-309810
(+)
MOCO
310890-311370 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Shewana3_0275
Operon
DOOR ID:
239746
Shewana3_0274
(moaA)
,
Shewana3_0275
(moaC)
,
Shewana3_0276,
Shewana3_0277,
Shewana3_0278,
Shewana3_0279,
Shewana3_0280
View Structure
3
771199-771373
(+)
lysine
771516-772872 (+)
Shewana3_0652
Aspartokinase
Shewana3_0652
Operon
DOOR ID:
239809
Shewana3_0652,
Shewana3_0653
View Structure
4
1061354-1061456
(-)
yybP-ykoY
1060712-1061306 (-)
Shewana3_0909
Shewana3_0909
Single gene
DOOR ID:
1910631
Shewana3_0909
View Structure
5
1624467-1624663
(+)
lysine
1624742-1626311 (+)
Shewana3_1407
Na+/H+ antiporter NhaC
Shewana3_1407
Single gene
DOOR ID:
1910848
Shewana3_1407
View Structure
6
2301588-2301686
(+)
TPP
2301845-2304008 (+)
Shewana3_1936
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Shewana3_1936
Operon
DOOR ID:
240039
Shewana3_1936,
Shewana3_1937,
Shewana3_1938,
Shewana3_1939,
Shewana3_1940
(thiG)
,
Shewana3_1941
(thiH)
View Structure
7
2655720-2655768
(-)
mini-ykkC
2655389-2655704 (-)
Sputw3181_2303
Sputw3181_2303
Single gene
DOOR ID:
1943249
Sputw3181_2303
View Structure
8
2992526-2992636
(-)
TPP
2990198-2992472 (-)
Shewana3_2500
TonB-dependent receptor
Shewana3_2500
Single gene
DOOR ID:
1911382
Shewana3_2500
View Structure
9
3587229-3587317
(-)
c-di-GMP-I
3584513-3587120 (-)
Shewana3_2984
Chitinase. Glycosyl Hydrolase family 18
Shewana3_2984
single gene
DOOR ID:
1911645
Shewana3_2984
View Structure
10
3921161-3921329
(-)
cobalamin
3920047-3921028 (-)
Shewana3_3280
ABC transporter related
Shewana3_3280
Operon
DOOR ID:
240283
Shewana3_3279,
Shewana3_3280
View Structure
11
4096627-4096752
(-)
glycine
4095116-4096475 (-)
Shewana3_3420
Amino acid carrier protein
Shewana3_3420
Single gene
DOOR ID:
1911852
Shewana3_3420
View Structure
12
4165879-4166109
(-)
cobalamin
4163809-4165771 (-)
Shewana3_3472
TonB-dependent siderophore receptor
Shewana3_3472
Single gene
DOOR ID:
1911878
Shewana3_3472
View Structure
Genome:
Shewanella sp. ANA-3
(
NC_008577.1
);
Phylum:
Gammaproteobacteria
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ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"152927-153159";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"152061-152715";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:13:"Shewana3_0134";i:14;s:11:"Single gene";i:15;s:7:"1910261";i:16;s:19:"Shewana3_0134(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"309677-309810";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"310890-311370";i:10;s:1:"+";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:13:"Shewana3_0275";i:14;s:6:"Operon";i:15;s:6:"239746";i:16;s:109:"Shewana3_0274(moaA);Shewana3_0275(moaC);Shewana3_0276;Shewana3_0277;Shewana3_0278;Shewana3_0279;Shewana3_0280";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"771199-771373";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"771516-772872";i:10;s:1:"+";i:11;s:13:"Shewana3_0652";i:12;s:14:"Aspartokinase ";i:13;s:13:"Shewana3_0652";i:14;s:6:"Operon";i:15;s:6:"239809";i:16;s:27:"Shewana3_0652;Shewana3_0653";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1061354-1061456";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1060712-1061306";i:10;s:1:"-";i:11;s:13:"Shewana3_0909";i:12;s:0:"";i:13;s:13:"Shewana3_0909";i:14;s:11:"Single gene";i:15;s:7:"1910631";i:16;s:13:"Shewana3_0909";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1624467-1624663";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1624742-1626311";i:10;s:1:"+";i:11;s:13:"Shewana3_1407";i:12;s:22:"Na+/H+ antiporter NhaC";i:13;s:13:"Shewana3_1407";i:14;s:11:"Single gene";i:15;s:7:"1910848";i:16;s:13:"Shewana3_1407";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2301588-2301686";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2301845-2304008";i:10;s:1:"+";i:11;s:13:"Shewana3_1936";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"Shewana3_1936";i:14;s:6:"Operon";i:15;s:6:"240039";i:16;s:95:"Shewana3_1936;Shewana3_1937;Shewana3_1938;Shewana3_1939;Shewana3_1940(thiG);Shewana3_1941(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2655720-2655768";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2655389-2655704";i:10;s:1:"-";i:11;s:14:"Sputw3181_2303";i:12;s:0:"";i:13;s:14:"Sputw3181_2303";i:14;s:11:"Single gene";i:15;s:7:"1943249";i:16;s:14:"Sputw3181_2303";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2992526-2992636";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2990198-2992472";i:10;s:1:"-";i:11;s:13:"Shewana3_2500";i:12;s:23:"TonB-dependent receptor";i:13;s:13:"Shewana3_2500";i:14;s:11:"Single gene";i:15;s:7:"1911382";i:16;s:13:"Shewana3_2500";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3587229-3587317";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3584513-3587120";i:10;s:1:"-";i:11;s:13:"Shewana3_2984";i:12;s:40:"Chitinase. Glycosyl Hydrolase family 18 ";i:13;s:13:"Shewana3_2984";i:14;s:11:"single gene";i:15;s:7:"1911645";i:16;s:13:"Shewana3_2984";i:17;s:82:"carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3921161-3921329";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3920047-3921028";i:10;s:1:"-";i:11;s:13:"Shewana3_3280";i:12;s:23:"ABC transporter related";i:13;s:13:"Shewana3_3280";i:14;s:6:"Operon";i:15;s:6:"240283";i:16;s:27:"Shewana3_3279;Shewana3_3280";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4096627-4096752";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4095116-4096475";i:10;s:1:"-";i:11;s:13:"Shewana3_3420";i:12;s:26:"Amino acid carrier protein";i:13;s:13:"Shewana3_3420";i:14;s:11:"Single gene";i:15;s:7:"1911852";i:16;s:13:"Shewana3_3420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008577.1";i:2;s:21:"Shewanella sp. ANA-3 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4165879-4166109";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4163809-4165771";i:10;s:1:"-";i:11;s:13:"Shewana3_3472";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:13:"Shewana3_3472";i:14;s:11:"Single gene";i:15;s:7:"1911878";i:16;s:13:"Shewana3_3472";i:17;s:0:"";i:18;s:15:"View Structure ";}}
