Genome: Aeromonas hydrophila subsp. hydrophila ATCC 7966 (NC_008570.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 81083-81260 (+)cobalamin81311-83147 (+)AHA_0074

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
AHA_0074Single gene

DOOR ID: 1907096
AHA_0074 View Structure
2 468097-468210 (+)TPP468493-470485 (+)AHA_0439

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
AHA_0439Operon

DOOR ID: 237464
AHA_0439,
AHA_0440,
AHA_0441 (thiF),
AHA_0442 (thiS),
AHA_0443 (thiG),
AHA_0444 (thiH)
View Structure
3 472003-472159 (+)ydaO-yuaA472160-472919 (+)thiF

Thiazole biosynthesis adenylyltransferase ThiF
AHA_0441Operon

DOOR ID: 237464
AHA_0439,
AHA_0440,
AHA_0441 (thiF),
AHA_0442 (thiS),
AHA_0443 (thiG),
AHA_0444 (thiH)
View Structure
4 551596-551681 (-)c-di-GMP-I551178-551550 (-)AHA_0518

Putative fimbrial protein
AHA_0518single gene

DOOR ID: 1906346
AHA_0518 View Structure
5 649328-649413 (-)c-di-GMP-I647840-649325 (-)AHA_0610

Chitin binding protein
AHA_0610single gene

DOOR ID: 1906072
AHA_0610 View Structure
6 947228-947318 (-)TPP946195-947176 (-)thiB

Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein
AHA_0876Operon

DOOR ID: 237545
AHA_0874 (thiQ),
AHA_0875 (thiP),
AHA_0876 (thiB)
View Structure
7 1055622-1055709 (+)c-di-GMP-I1055819-1058429 (+)AHA_0977

Chitinase A
AHA_0977single gene

DOOR ID: 1907010
AHA_0977 View Structure
8 1379556-1379635 (+)glycine1379858-1381235 (+)agcS-1

Amino acid carrier protein
AHA_1271Single gene

DOOR ID: 1907067
AHA_1271 (agcS-1) View Structure
9 1379641-1379751 (+)glycine1379858-1381235 (+)agcS-1

Amino acid carrier protein
AHA_1271Single gene

DOOR ID: 1907067
AHA_1271 (agcS-1) View Structure
10 1424492-1424649 (+)FMN1424751-1425405 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
AHA_1311Single gene

DOOR ID: 1905419
AHA_1311 (ribB) View Structure
11 1732669-1732808 (+)MOCO1734040-1734550 (+)napF

Ferredoxin-type protein NapF
AHA_1584Operon

DOOR ID: 237674
AHA_1584 (napF),
AHA_1585 (napD)
View Structure
12 1984541-1984712 (+)lysine1984798-1986379 (+)AHA_1821

Na+/H+ antiporter family
AHA_1821Single gene

DOOR ID: 1906561
AHA_1821 View Structure
13 2861134-2861358 (+)lysine2861447-2862800 (+)AHA_2570

Aspartokinase
AHA_2570Single gene

DOOR ID: 1907113
AHA_2570 View Structure
14 3083644-3083758 (+)yybP-ykoY3083849-3084407 (+)AHA_2746

Integral membrane protein
AHA_2746Operon

DOOR ID: 237893
AHA_2746,
AHA_2747,
AHA_2748,
AHA_2749
View Structure
15 3183247-3183416 (-)ykoK3181782-3183126 (-)mgtE-1

Magnesium transporter MgtE
AHA_2831Single gene

DOOR ID: 1907147
AHA_2831 (mgtE-1) View Structure
16 3873053-3873138 (-)c-di-GMP-I3869901-3872904 (-)AHA_3440

Chitodextrinase
AHA_3440single gene

DOOR ID: 1906680
AHA_3440 View Structure
17 4051489-4051540 (-)mini-ykkC4050941-4051349 (-)azo3690

azo3690Single gene

DOOR ID: 1933768
azo3690 View Structure
18 4255284-4255390 (-)yybP-ykoY4253058-4254117 (+)AHA_3828

L-asparaginase; type II
AHA_3828Single gene

DOOR ID: 1906039
AHA_3828 View Structure