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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
38745-38855
(+)
MOCO
39106-39952 (+)
Sfum_0027
Extracellular solute-binding protein; family 1
Sfum_0027
Single gene
DOOR ID:
1900795
Sfum_0027
View Structure
2
387371-387573
(+)
cobalamin
387697-388759 (+)
Sfum_0323
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
Sfum_0323
Single gene
DOOR ID:
1900928
Sfum_0323
View Structure
3
611193-611274
(-)
c-di-GMP-I
609454-610006 (-)
Sfum_0504
Transcriptional regulator; MucR family
Sfum_0504
single gene
DOOR ID:
1901005
Sfum_0504
View Structure
4
1370302-1370477
(-)
cobalamin
1368828-1369713 (-)
Sfum_1101
Sirohydrochlorin cobaltochelatase
Sfum_1101
Single gene
DOOR ID:
1901318
Sfum_1101
View Structure
5
2034257-2034435
(-)
ykoK
2032773-2033808 (-)
Sfum_1657
Mg2+ transporter protein; CorA-like
Sfum_1657
Single gene
DOOR ID:
1901569
Sfum_1657
View Structure
6
2207671-2207806
(-)
ydaO-yuaA
2205628-2207614 (-)
Sfum_1808
Probable potassium transport system protein kup 1
Sfum_1808
Single gene
DOOR ID:
1901637
Sfum_1808
View Structure
7
2222264-2222358
(+)
TPP
2222413-2223202 (+)
Sfum_1820
UBA/THIF-type NAD/FAD binding protein
Sfum_1820
Operon
DOOR ID:
235422
Sfum_1820,
Sfum_1821
(thiG)
,
Sfum_1822
(thiH)
View Structure
8
2611879-2612073
(-)
cobalamin
2610947-2611622 (-)
Sfum_2136
Precorrin-8X methylmutase
Sfum_2136
Operon
DOOR ID:
235478
Sfum_2133,
Sfum_2134,
Sfum_2135,
Sfum_2136
View Structure
9
2956592-2956762
(+)
ykoK
2957256-2958522 (+)
Sfum_2395
Natural resistance-associated macrophage protein
Sfum_2395
Single gene
DOOR ID:
1901936
Sfum_2395
View Structure
10
3035634-3035772
(-)
cobalamin
3033981-3035394 (-)
Sfum_2456
Radical SAM domain protein
Sfum_2456
Single gene
DOOR ID:
1901965
Sfum_2456
View Structure
11
3150567-3150651
(+)
c-di-GMP-I
3150912-3151470 (+)
Sfum_2552
Uncharacterized protein
Sfum_2552
single gene
DOOR ID:
1902015
Sfum_2552
View Structure
12
3389252-3389376
(-)
cobalamin
3387089-3389195 (-)
Sfum_2744
TonB-dependent receptor
Sfum_2744
Single gene
DOOR ID:
1902099
Sfum_2744
View Structure
13
3391022-3391207
(-)
cobalamin
3390471-3390924 (-)
Sfum_2746
Sfum_2746
Operon
DOOR ID:
235595
Sfum_2745,
Sfum_2746
View Structure
14
3423188-3423285
(-)
TPP
3421807-3423097 (-)
Sfum_2776
Thiamine biosynthesis protein ThiC
Sfum_2776
Single gene
DOOR ID:
1902118
Sfum_2776
View Structure
15
3591322-3591388
(-)
fluoride
3589428-3591246 (-)
Sfum_2910
Dynamin family protein
Sfum_2910
Single gene
DOOR ID:
1902189
Sfum_2910
View Structure
16
4137263-4137350
(+)
c-di-GMP-I
4137525-4138413 (+)
Sfum_3372
Metal dependent phosphohydrolase
Sfum_3372
single gene
DOOR ID:
1902398
Sfum_3372
View Structure
17
4310866-4310955
(+)
c-di-GMP-I
4311529-4312183 (+)
Sfum_3524
Uncharacterized protein
Sfum_3524
single gene
DOOR ID:
1902475
Sfum_3524
View Structure
18
4434364-4434438
(+)
c-di-GMP-I
4434593-4435277 (+)
Sfum_3623
Uncharacterized protein
Sfum_3623
single gene
DOOR ID:
1902536
Sfum_3623
View Structure
19
4546307-4546395
(-)
c-di-GMP-I
4545076-4546021 (-)
Sfum_3726
Uncharacterized protein
Sfum_3726
single gene
DOOR ID:
1902580
Sfum_3726
View Structure
20
4864879-4864953
(-)
c-di-GMP-I
4863548-4864739 (-)
Sfum_4006
Uncharacterized protein
Sfum_4006
single gene
DOOR ID:
1902692
Sfum_4006
View Structure
Genome:
Syntrophobacter fumaroxidans MPOB
(
NC_008554.1
);
Phylum:
delta/epsilon subdivisions
a:21:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:11:"38745-38855";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:11:"39106-39952";i:10;s:1:"+";i:11;s:9:"Sfum_0027";i:12;s:46:"Extracellular solute-binding protein; family 1";i:13;s:9:"Sfum_0027";i:14;s:11:"Single gene";i:15;s:7:"1900795";i:16;s:9:"Sfum_0027";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"387371-387573";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"387697-388759";i:10;s:1:"+";i:11;s:9:"Sfum_0323";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:9:"Sfum_0323";i:14;s:11:"Single gene";i:15;s:7:"1900928";i:16;s:9:"Sfum_0323";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"611193-611274";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"609454-610006";i:10;s:1:"-";i:11;s:9:"Sfum_0504";i:12;s:38:"Transcriptional regulator; MucR family";i:13;s:9:"Sfum_0504";i:14;s:11:"single gene";i:15;s:7:"1901005";i:16;s:9:"Sfum_0504";i:17;s:55:"regulation of transcription; DNA-templated [GO:0006355]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1370302-1370477";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1368828-1369713";i:10;s:1:"-";i:11;s:9:"Sfum_1101";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:9:"Sfum_1101";i:14;s:11:"Single gene";i:15;s:7:"1901318";i:16;s:9:"Sfum_1101";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2034257-2034435";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2032773-2033808";i:10;s:1:"-";i:11;s:9:"Sfum_1657";i:12;s:35:"Mg2+ transporter protein; CorA-like";i:13;s:9:"Sfum_1657";i:14;s:11:"Single gene";i:15;s:7:"1901569";i:16;s:9:"Sfum_1657";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2207671-2207806";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2205628-2207614";i:10;s:1:"-";i:11;s:9:"Sfum_1808";i:12;s:49:"Probable potassium transport system protein kup 1";i:13;s:9:"Sfum_1808";i:14;s:11:"Single gene";i:15;s:7:"1901637";i:16;s:9:"Sfum_1808";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2222264-2222358";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2222413-2223202";i:10;s:1:"+";i:11;s:9:"Sfum_1820";i:12;s:37:"UBA/THIF-type NAD/FAD binding protein";i:13;s:9:"Sfum_1820";i:14;s:6:"Operon";i:15;s:6:"235422";i:16;s:41:"Sfum_1820;Sfum_1821(thiG);Sfum_1822(thiH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2611879-2612073";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2610947-2611622";i:10;s:1:"-";i:11;s:9:"Sfum_2136";i:12;s:26:"Precorrin-8X methylmutase ";i:13;s:9:"Sfum_2136";i:14;s:6:"Operon";i:15;s:6:"235478";i:16;s:39:"Sfum_2133;Sfum_2134;Sfum_2135;Sfum_2136";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2956592-2956762";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2957256-2958522";i:10;s:1:"+";i:11;s:9:"Sfum_2395";i:12;s:48:"Natural resistance-associated macrophage protein";i:13;s:9:"Sfum_2395";i:14;s:11:"Single gene";i:15;s:7:"1901936";i:16;s:9:"Sfum_2395";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3035634-3035772";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3033981-3035394";i:10;s:1:"-";i:11;s:9:"Sfum_2456";i:12;s:26:"Radical SAM domain protein";i:13;s:9:"Sfum_2456";i:14;s:11:"Single gene";i:15;s:7:"1901965";i:16;s:9:"Sfum_2456";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3150567-3150651";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3150912-3151470";i:10;s:1:"+";i:11;s:9:"Sfum_2552";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Sfum_2552";i:14;s:11:"single gene";i:15;s:7:"1902015";i:16;s:9:"Sfum_2552";i:17;s:62:"protein secretion by the type II secretion system [GO:0015628]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3389252-3389376";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3387089-3389195";i:10;s:1:"-";i:11;s:9:"Sfum_2744";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Sfum_2744";i:14;s:11:"Single gene";i:15;s:7:"1902099";i:16;s:9:"Sfum_2744";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3391022-3391207";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3390471-3390924";i:10;s:1:"-";i:11;s:9:"Sfum_2746";i:12;s:0:"";i:13;s:9:"Sfum_2746";i:14;s:6:"Operon";i:15;s:6:"235595";i:16;s:19:"Sfum_2745;Sfum_2746";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3423188-3423285";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3421807-3423097";i:10;s:1:"-";i:11;s:9:"Sfum_2776";i:12;s:34:"Thiamine biosynthesis protein ThiC";i:13;s:9:"Sfum_2776";i:14;s:11:"Single gene";i:15;s:7:"1902118";i:16;s:9:"Sfum_2776";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3591322-3591388";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3589428-3591246";i:10;s:1:"-";i:11;s:9:"Sfum_2910";i:12;s:22:"Dynamin family protein";i:13;s:9:"Sfum_2910";i:14;s:11:"Single gene";i:15;s:7:"1902189";i:16;s:9:"Sfum_2910";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4137263-4137350";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4137525-4138413";i:10;s:1:"+";i:11;s:9:"Sfum_3372";i:12;s:32:"Metal dependent phosphohydrolase";i:13;s:9:"Sfum_3372";i:14;s:11:"single gene";i:15;s:7:"1902398";i:16;s:9:"Sfum_3372";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4310866-4310955";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4311529-4312183";i:10;s:1:"+";i:11;s:9:"Sfum_3524";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Sfum_3524";i:14;s:11:"single gene";i:15;s:7:"1902475";i:16;s:9:"Sfum_3524";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4434364-4434438";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4434593-4435277";i:10;s:1:"+";i:11;s:9:"Sfum_3623";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Sfum_3623";i:14;s:11:"single gene";i:15;s:7:"1902536";i:16;s:9:"Sfum_3623";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4546307-4546395";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4545076-4546021";i:10;s:1:"-";i:11;s:9:"Sfum_3726";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Sfum_3726";i:14;s:11:"single gene";i:15;s:7:"1902580";i:16;s:9:"Sfum_3726";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_008554.1";i:2;s:34:"Syntrophobacter fumaroxidans MPOB ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"4864879-4864953";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4863548-4864739";i:10;s:1:"-";i:11;s:9:"Sfum_4006";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Sfum_4006";i:14;s:11:"single gene";i:15;s:7:"1902692";i:16;s:9:"Sfum_4006";i:17;s:0:"";i:18;s:15:"View Structure ";}}