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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
161541-161674
(-)
glycine
160338-161457 (-)
gcvT
Bcen2424_0146
Operon
DOOR ID:
233351
Bcen2424_0144,
Bcen2424_0145,
Bcen2424_0146
(gcvT)
View Structure
2
161710-161813
(-)
glycine
160338-161457 (-)
gcvT
Bcen2424_0146
Operon
DOOR ID:
233351
Bcen2424_0144,
Bcen2424_0145,
Bcen2424_0146
(gcvT)
View Structure
3
313808-313926
(+)
SAH
313958-315377 (+)
Bcen2424_0272
Bcen2424_0272
Operon
DOOR ID:
233375
Bcen2424_0272,
Bcen2424_0273,
Bcen2424_0274
View Structure
4
462652-462775
(+)
TPP
463000-464137 (+)
Bcen2424_0410
Bcen2424_0410
Operon
DOOR ID:
233402
Bcen2424_0410,
Bcen2424_0411,
Bcen2424_0412
(thiG)
,
Bcen2424_0413
View Structure
5
907214-907314
(+)
ZMP-ZTP
907451-908699 (+)
glyA
Bcen2424_0806
Operon
DOOR ID:
233487
Bcen2424_0806
(glyA)
,
Bcen2424_0807
(nrdR)
View Structure
6
1125304-1125441
(-)
yybP-ykoY
1123887-1124598 (+)
Bcen2424_1016
Bcen2424_1016
Single gene
DOOR ID:
1897578
Bcen2424_1016
View Structure
7
1354563-1354679
(-)
TPP
1352506-1354438 (-)
Bcen2424_1223
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bcen2424_1223
Single gene
DOOR ID:
1897662
Bcen2424_1223
View Structure
8
1836853-1837088
(-)
cobalamin
1835933-1836683 (-)
Bcen2424_1654
Bcen2424_1654
Operon
DOOR ID:
233659
Bcen2424_1651,
Bcen2424_1652,
Bcen2424_1653,
Bcen2424_1654
View Structure
9
1839445-1839711
(+)
cobalamin
1840040-1841129 (+)
Bcen2424_1656
Bcen2424_1656
Operon
DOOR ID:
233660
Bcen2424_1656,
Bcen2424_1657
(cobN)
,
Bcen2424_1658,
Bcen2424_1659,
Bcen2424_1660,
Bcen2424_1661
View Structure
10
1862015-1862206
(-)
cobalamin
1859925-1860552 (-)
cobH
Bcen2424_1673
Operon
DOOR ID:
233663
Bcen2424_1671,
Bcen2424_1672,
Bcen2424_1673
(cobH)
,
Bcen2424_1674
View Structure
11
2127813-2127857
(-)
mini-ykkC
2127476-2127791 (-)
AHA_1944
AHA_1944
Single gene
DOOR ID:
1907154
AHA_1944
View Structure
12
2207099-2207220
(-)
SAH
2204974-2206594 (-)
guaA
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
Bcen2424_1989
Single gene
DOOR ID:
1897959
Bcen2424_1989
(guaA)
View Structure
13
2728203-2728452
(-)
cobalamin
2727045-2728161 (-)
Bcen2424_2455
Bcen2424_2455
Operon
DOOR ID:
233825
Bcen2424_2454,
Bcen2424_2455
View Structure
14
2978520-2978668
(-)
FMN
2977690-2978401 (-)
Bcen2424_2688
Bcen2424_2688
Single gene
DOOR ID:
1898253
Bcen2424_2688
View Structure
Genome:
Burkholderia cenocepacia HI2424 chromosome I
(
NC_008542.1
);
Phylum:
Betaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008542.1";i:2;s:44:"Burkholderia cenocepacia HI2424 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1836853-1837088";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1835933-1836683";i:10;s:1:"-";i:11;s:13:"Bcen2424_1654";i:12;s:0:"";i:13;s:13:"Bcen2424_1654";i:14;s:6:"Operon";i:15;s:6:"233659";i:16;s:55:"Bcen2424_1651;Bcen2424_1652;Bcen2424_1653;Bcen2424_1654";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008542.1";i:2;s:44:"Burkholderia cenocepacia HI2424 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1839445-1839711";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1840040-1841129";i:10;s:1:"+";i:11;s:13:"Bcen2424_1656";i:12;s:0:"";i:13;s:13:"Bcen2424_1656";i:14;s:6:"Operon";i:15;s:6:"233660";i:16;s:89:"Bcen2424_1656;Bcen2424_1657(cobN);Bcen2424_1658;Bcen2424_1659;Bcen2424_1660;Bcen2424_1661";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008542.1";i:2;s:44:"Burkholderia cenocepacia HI2424 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1862015-1862206";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1859925-1860552";i:10;s:1:"-";i:11;s:4:"cobH";i:12;s:0:"";i:13;s:13:"Bcen2424_1673";i:14;s:6:"Operon";i:15;s:6:"233663";i:16;s:61:"Bcen2424_1671;Bcen2424_1672;Bcen2424_1673(cobH);Bcen2424_1674";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008542.1";i:2;s:44:"Burkholderia cenocepacia HI2424 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2127813-2127857";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2127476-2127791";i:10;s:1:"-";i:11;s:8:"AHA_1944";i:12;s:0:"";i:13;s:8:"AHA_1944";i:14;s:11:"Single gene";i:15;s:7:"1907154";i:16;s:8:"AHA_1944";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008542.1";i:2;s:44:"Burkholderia cenocepacia HI2424 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2207099-2207220";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2204974-2206594";i:10;s:1:"-";i:11;s:4:"guaA";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:13:"Bcen2424_1989";i:14;s:11:"Single gene";i:15;s:7:"1897959";i:16;s:19:"Bcen2424_1989(guaA)";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008542.1";i:2;s:44:"Burkholderia cenocepacia HI2424 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2728203-2728452";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2727045-2728161";i:10;s:1:"-";i:11;s:13:"Bcen2424_2455";i:12;s:0:"";i:13;s:13:"Bcen2424_2455";i:14;s:6:"Operon";i:15;s:6:"233825";i:16;s:27:"Bcen2424_2454;Bcen2424_2455";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008542.1";i:2;s:44:"Burkholderia cenocepacia HI2424 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2978520-2978668";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2977690-2978401";i:10;s:1:"-";i:11;s:13:"Bcen2424_2688";i:12;s:0:"";i:13;s:13:"Bcen2424_2688";i:14;s:11:"Single gene";i:15;s:7:"1898253";i:16;s:13:"Bcen2424_2688";i:17;s:0:"";i:18;s:15:"View Structure ";}}