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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
65964-66061
(+)
glycine
66334-67762 (+)
Arth_0061
L-serine ammonia-lyase (L-serine dehydratase 1) (7)
Arth_0061
Operon
DOOR ID:
1176196
Arth_0064,
Arth_0063,
Arth_0062,
Arth_0061
View Structure
2
696338-696522
(-)
ydaO-yuaA
695561-696338 (-)
Arth_0653
Arth_0653
Single gene
DOOR ID:
1895815
Arth_0653
View Structure
3
825654-825752
(+)
glycine
825953-828806 (+)
Arth_0764
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Arth_0764
Operon
DOOR ID:
1176339
Arth_0764,
Arth_0765
(gcvT)
View Structure
4
860239-860482
(+)
ydaO-yuaA
860545-861307 (+)
Arth_0795
Peptidase M23B
Arth_0795
Single gene
DOOR ID:
1895876
Arth_0795
View Structure
5
861421-861614
(+)
ydaO-yuaA
861618-862359 (+)
Arth_0796
NLP/P60 protein
Arth_0796
Single gene
DOOR ID:
1895877
Arth_0796
View Structure
6
1477703-1477817
(+)
SAM-IV
1477878-1479195 (+)
Arth_1317
O-acetylhomoserine sulfhydrolase (9)
Arth_1317
Single gene
DOOR ID:
1896082
Arth_1317
View Structure
7
1479286-1479401
(+)
SAM-IV
1479413-1480598 (+)
Arth_1318
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Arth_1318
Single gene
DOOR ID:
1896083
Arth_1318
View Structure
8
1868893-1869047
(+)
FMN
1869142-1870366 (+)
Arth_1674
5-amino-6-(5-phosphoribosylamino)uracil reductase (93)
Arth_1674
Operon
DOOR ID:
1176538
Arth_1674,
Arth_1675,
Arth_1676,
Arth_1677,
Arth_1678
(ribH)
,
Arth_1679
(hisE)
,
Arth_1680
(hisG)
,
Arth_1681
View Structure
9
2625917-2626093
(-)
ydaO-yuaA
2625148-2625913 (-)
Arth_2336
Arth_2336
Single gene
DOOR ID:
1896443
Arth_2336
View Structure
10
2680873-2680970
(-)
TPP
2678662-2678971 (-)
rplU
50S ribosomal protein L21
Arth_2391
Operon
DOOR ID:
1176681
Arth_2390
(rpmA)
,
Arth_2391
(rplU)
View Structure
11
2781075-2781182
(+)
TPP
2783025-2783760 (-)
Arth_2488
Arth_2488
Single gene
DOOR ID:
1896502
Arth_2488
View Structure
12
2980407-2980520
(+)
SAM-IV
2980555-2981968 (+)
Arth_2656
Cysteine desulfurase
Arth_2656
Operon
DOOR ID:
1176743
Arth_2656,
Arth_2657,
Arth_2658,
Arth_2659,
Arth_2660
View Structure
13
3132830-3132949
(-)
TPP
3131257-3131494 (-)
Arth_2780
Thiamine biosynthesis protein ThiS
Arth_2780
Operon
DOOR ID:
1176767
Arth_2778,
Arth_2779
(thiG)
,
Arth_2780,
Arth_2781
View Structure
14
4240996-4241063
(+)
ykkC-III
4241072-4241396 (+)
Arth_3764
Arth_3764
operon
DOOR ID:
1176973
Arth_3764,
Arth_3765
View Structure
15
4342138-4342250
(+)
SAM-IV
4342598-4343009 (+)
Arth_3859
Rhodanese domain protein
Arth_3859
Operon
DOOR ID:
1176991
Arth_3858,
Arth_3859,
Arth_3860
View Structure
16
4350696-4350839
(-)
TPP
4349989-4350622 (-)
Arth_3866
ABC transporter; permease protein
Arth_3866
Operon
DOOR ID:
1176993
Arth_3864,
Arth_3865,
Arth_3866
View Structure
Genome:
Arthrobacter sp. FB24
(
NC_008541.1
);
Phylum:
Actinobacteria
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"65964-66061";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"66334-67762";i:10;s:1:"+";i:11;s:9:"Arth_0061";i:12;s:51:"L-serine ammonia-lyase (L-serine dehydratase 1) (7)";i:13;s:9:"Arth_0061";i:14;s:6:"Operon";i:15;s:7:"1176196";i:16;s:39:"Arth_0064;Arth_0063;Arth_0062;Arth_0061";i:17;s:28:"gluconeogenesis [GO:0006094]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"696338-696522";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"695561-696338";i:10;s:1:"-";i:11;s:9:"Arth_0653";i:12;s:0:"";i:13;s:9:"Arth_0653";i:14;s:11:"Single gene";i:15;s:7:"1895815";i:16;s:9:"Arth_0653";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. 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FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"860239-860482";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"860545-861307";i:10;s:1:"+";i:11;s:9:"Arth_0795";i:12;s:14:"Peptidase M23B";i:13;s:9:"Arth_0795";i:14;s:11:"Single gene";i:15;s:7:"1895876";i:16;s:9:"Arth_0795";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"861421-861614";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"861618-862359";i:10;s:1:"+";i:11;s:9:"Arth_0796";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Arth_0796";i:14;s:11:"Single gene";i:15;s:7:"1895877";i:16;s:9:"Arth_0796";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1477703-1477817";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1477878-1479195";i:10;s:1:"+";i:11;s:9:"Arth_1317";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:9:"Arth_1317";i:14;s:11:"Single gene";i:15;s:7:"1896082";i:16;s:9:"Arth_1317";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1479286-1479401";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1479413-1480598";i:10;s:1:"+";i:11;s:9:"Arth_1318";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Arth_1318";i:14;s:11:"Single gene";i:15;s:7:"1896083";i:16;s:9:"Arth_1318";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1868893-1869047";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1869142-1870366";i:10;s:1:"+";i:11;s:9:"Arth_1674";i:12;s:54:"5-amino-6-(5-phosphoribosylamino)uracil reductase (93)";i:13;s:9:"Arth_1674";i:14;s:6:"Operon";i:15;s:7:"1176538";i:16;s:97:"Arth_1674;Arth_1675;Arth_1676;Arth_1677;Arth_1678(ribH);Arth_1679(hisE);Arth_1680(hisG);Arth_1681";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2625917-2626093";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2625148-2625913";i:10;s:1:"-";i:11;s:9:"Arth_2336";i:12;s:0:"";i:13;s:9:"Arth_2336";i:14;s:11:"Single gene";i:15;s:7:"1896443";i:16;s:9:"Arth_2336";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2680873-2680970";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2678662-2678971";i:10;s:1:"-";i:11;s:4:"rplU";i:12;s:25:"50S ribosomal protein L21";i:13;s:9:"Arth_2391";i:14;s:6:"Operon";i:15;s:7:"1176681";i:16;s:31:"Arth_2390(rpmA);Arth_2391(rplU)";i:17;s:24:"translation [GO:0006412]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2781075-2781182";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2783025-2783760";i:10;s:1:"-";i:11;s:9:"Arth_2488";i:12;s:0:"";i:13;s:9:"Arth_2488";i:14;s:11:"Single gene";i:15;s:7:"1896502";i:16;s:9:"Arth_2488";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2980407-2980520";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2980555-2981968";i:10;s:1:"+";i:11;s:9:"Arth_2656";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Arth_2656";i:14;s:6:"Operon";i:15;s:7:"1176743";i:16;s:49:"Arth_2656;Arth_2657;Arth_2658;Arth_2659;Arth_2660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3132830-3132949";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3131257-3131494";i:10;s:1:"-";i:11;s:9:"Arth_2780";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Arth_2780";i:14;s:6:"Operon";i:15;s:7:"1176767";i:16;s:45:"Arth_2778;Arth_2779(thiG);Arth_2780;Arth_2781";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4240996-4241063";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"4241072-4241396";i:10;s:1:"+";i:11;s:9:"Arth_3764";i:12;s:0:"";i:13;s:9:"Arth_3764";i:14;s:6:"operon";i:15;s:7:"1176973";i:16;s:19:"Arth_3764;Arth_3765";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4342138-4342250";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4342598-4343009";i:10;s:1:"+";i:11;s:9:"Arth_3859";i:12;s:24:"Rhodanese domain protein";i:13;s:9:"Arth_3859";i:14;s:6:"Operon";i:15;s:7:"1176991";i:16;s:29:"Arth_3858;Arth_3859;Arth_3860";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_008541.1";i:2;s:21:"Arthrobacter sp. FB24";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4350696-4350839";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4349989-4350622";i:10;s:1:"-";i:11;s:9:"Arth_3866";i:12;s:33:"ABC transporter; permease protein";i:13;s:9:"Arth_3866";i:14;s:6:"Operon";i:15;s:7:"1176993";i:16;s:29:"Arth_3864;Arth_3865;Arth_3866";i:17;s:0:"";i:18;s:15:"View Structure ";}}
