About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
173892-174006
(-)
FMN
172658-173759 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
SPD_0169
Operon
DOOR ID:
231008
SPD_0166
(ribH)
,
SPD_0167
(ribB)
,
SPD_0168
(ribE)
,
SPD_0169
(ribD)
View Structure
2
376439-376527
(+)
glycine
376617-377940 (+)
SPD_0372
Sodium:alanine symporter family protein
SPD_0372
Single gene
DOOR ID:
1891866
SPD_0372
View Structure
3
440975-441209
(+)
FMN
441373-441937 (+)
SPD_0437
Riboflavin transporter
SPD_0437
Operon
DOOR ID:
231062
SPD_0437,
SPD_0438,
SPD_0439,
SPD_0440
View Structure
4
643884-643972
(+)
TPP
644186-644855 (+)
SPD_0622
Aminopyrimidine aminohydrolase
SPD_0622
Single gene
DOOR ID:
1892184
SPD_0622
View Structure
5
646766-646854
(+)
TPP
647114-647675 (+)
SPD_0625
Membrane protein; putative
SPD_0625
Operon
DOOR ID:
231105
SPD_0625,
SPD_0626,
SPD_0627
View Structure
6
653457-653555
(-)
TPP
652581-653373 (-)
thiD
Phosphomethylpyrimidine kinase
SPD_0632
Single gene
DOOR ID:
1892262
SPD_0632
(thiD)
View Structure
7
1642356-1642451
(+)
purine
1642850-1643432 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
SPD_1628
Operon
DOOR ID:
231324
SPD_1628
(xpt)
,
SPD_1629
(pbuX)
View Structure
8
2006327-2006429
(-)
TPP
2005965-2006256 (-)
SPD_2027
SPD_2027
Operon
DOOR ID:
231391
SPD_2024,
SPD_2025,
SPD_2026,
SPD_2027
View Structure
Genome:
Streptococcus pneumoniae D39
(
NC_008533.1
);
Phylum:
Firmicutes
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008533.1";i:2;s:29:"Streptococcus pneumoniae D39 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"173892-174006";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"172658-173759";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:8:"SPD_0169";i:14;s:6:"Operon";i:15;s:6:"231008";i:16;s:59:"SPD_0166(ribH);SPD_0167(ribB);SPD_0168(ribE);SPD_0169(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008533.1";i:2;s:29:"Streptococcus pneumoniae D39 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"376439-376527";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"376617-377940";i:10;s:1:"+";i:11;s:8:"SPD_0372";i:12;s:39:"Sodium:alanine symporter family protein";i:13;s:8:"SPD_0372";i:14;s:11:"Single gene";i:15;s:7:"1891866";i:16;s:8:"SPD_0372";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008533.1";i:2;s:29:"Streptococcus pneumoniae D39 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"440975-441209";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"441373-441937";i:10;s:1:"+";i:11;s:8:"SPD_0437";i:12;s:22:"Riboflavin transporter";i:13;s:8:"SPD_0437";i:14;s:6:"Operon";i:15;s:6:"231062";i:16;s:35:"SPD_0437;SPD_0438;SPD_0439;SPD_0440";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008533.1";i:2;s:29:"Streptococcus pneumoniae D39 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"643884-643972";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"644186-644855";i:10;s:1:"+";i:11;s:8:"SPD_0622";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:8:"SPD_0622";i:14;s:11:"Single gene";i:15;s:7:"1892184";i:16;s:8:"SPD_0622";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008533.1";i:2;s:29:"Streptococcus pneumoniae D39 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"646766-646854";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"647114-647675";i:10;s:1:"+";i:11;s:8:"SPD_0625";i:12;s:26:"Membrane protein; putative";i:13;s:8:"SPD_0625";i:14;s:6:"Operon";i:15;s:6:"231105";i:16;s:26:"SPD_0625;SPD_0626;SPD_0627";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008533.1";i:2;s:29:"Streptococcus pneumoniae D39 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"653457-653555";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"652581-653373";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:8:"SPD_0632";i:14;s:11:"Single gene";i:15;s:7:"1892262";i:16;s:14:"SPD_0632(thiD)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008533.1";i:2;s:29:"Streptococcus pneumoniae D39 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1642356-1642451";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1642850-1643432";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:8:"SPD_1628";i:14;s:6:"Operon";i:15;s:6:"231324";i:16;s:28:"SPD_1628(xpt);SPD_1629(pbuX)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008533.1";i:2;s:29:"Streptococcus pneumoniae D39 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2006327-2006429";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2005965-2006256";i:10;s:1:"-";i:11;s:8:"SPD_2027";i:12;s:0:"";i:13;s:8:"SPD_2027";i:14;s:6:"Operon";i:15;s:6:"231391";i:16;s:35:"SPD_2024;SPD_2025;SPD_2026;SPD_2027";i:17;s:0:"";i:18;s:15:"View Structure ";}}
