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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
123967-124099
(+)
THF
124135-124693 (+)
LEUM_0142
Folate transporter FolT (Folate ECF transporter S component FolT)
LEUM_0142
Operon
DOOR ID:
230201
LEUM_0142,
LEUM_0143
View Structure
2
444243-444333
(+)
TPP
444477-445257 (+)
LEUM_0485
Hydroxyethylthiazole kinase 1 (0) (4-methyl-5-beta-hydroxyethylthiazole kinase 1) (TH kinase 1) (Thz kinase 1)
LEUM_0485
Operon
DOOR ID:
230266
LEUM_0485,
LEUM_0486,
LEUM_0487
View Structure
3
611903-611999
(+)
purine
612222-613365 (+)
LEUM_0645
GMP reductase
LEUM_0645
Operon
DOOR ID:
230302
LEUM_0645,
LEUM_0646
View Structure
4
635548-635716
(+)
lysine
635799-637092 (+)
LEUM_0667
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LEUM_0667
Operon
DOOR ID:
230305
LEUM_0667,
LEUM_0668,
LEUM_0669,
LEUM_0670,
LEUM_0671
View Structure
5
737024-737067
(+)
PreQ1
737113-738100 (+)
LEUM_0759
Inosine-uridine nucleoside N-ribohydrolase
LEUM_0759
Operon
DOOR ID:
230326
LEUM_0759,
LEUM_0760
View Structure
6
745322-745411
(-)
TPP
744421-745003 (-)
LEUM_0769
Predicted membrane protein
LEUM_0769
Operon
DOOR ID:
230328
LEUM_0766,
LEUM_0767,
LEUM_0768,
LEUM_0769
View Structure
7
807573-807710
(+)
FMN
807832-808867 (+)
LEUM_0822
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
LEUM_0822
Operon
DOOR ID:
230342
LEUM_0822,
LEUM_0823,
LEUM_0824,
LEUM_0825
(ribH)
View Structure
8
918761-918860
(+)
ykkC-yxkD
919117-919792 (+)
LEUM_0917
Predicted hydrolase of the HAD superfamily
LEUM_0917
Single gene
DOOR ID:
1890848
LEUM_0917
View Structure
9
935688-935777
(+)
TPP
936037-937324 (+)
LEUM_0933
Xanthine/uracil permease
LEUM_0933
Operon
DOOR ID:
230367
LEUM_0933,
LEUM_0934,
LEUM_0935,
LEUM_0936,
LEUM_0937,
LEUM_0938,
LEUM_0939,
LEUM_0940,
LEUM_0941,
LEUM_0942
View Structure
10
935860-935959
(+)
TPP
936037-937324 (+)
LEUM_0933
Xanthine/uracil permease
LEUM_0933
Operon
DOOR ID:
230367
LEUM_0933,
LEUM_0934,
LEUM_0935,
LEUM_0936,
LEUM_0937,
LEUM_0938,
LEUM_0939,
LEUM_0940,
LEUM_0941,
LEUM_0942
View Structure
11
980640-980728
(+)
TPP
980816-981164 (+)
LEUM_0981
N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase
LEUM_0981
Operon
DOOR ID:
230374
LEUM_0981,
LEUM_0982
View Structure
12
1156492-1156582
(-)
TPP
1155721-1156360 (-)
thiE
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
LEUM_1159
Operon
DOOR ID:
230414
LEUM_1156
(thiG)
,
LEUM_1157,
LEUM_1158,
LEUM_1159
(thiE)
View Structure
13
1235002-1235047
(-)
PreQ1
1234437-1234995 (-)
fabG
Predicted membrane protein
LEUM_1240
Operon
DOOR ID:
230432
LEUM_1239
(fabG)
,
LEUM_1240
View Structure
14
1284677-1284813
(-)
FMN
1283987-1284578 (-)
LEUM_1295
Riboflavin transporter RibU (Riboflavin ECF transporter S component RibU)
LEUM_1295
Single gene
DOOR ID:
1890952
LEUM_1295
View Structure
15
1448857-1448964
(-)
TPP
1448276-1448747 (-)
LEUM_1455
Nucleoside 2-deoxyribosyltransferase
LEUM_1455
Operon
DOOR ID:
230474
LEUM_1453,
LEUM_1454,
LEUM_1455
View Structure
16
1546926-1547014
(-)
TPP
1546211-1546802 (-)
LEUM_1545
ABC-type cobalt transport system; membrane component
LEUM_1545
Operon
DOOR ID:
230495
LEUM_1542,
LEUM_1543,
LEUM_1544,
LEUM_1545
View Structure
17
1547147-1547249
(+)
TPP
1547323-1548028 (+)
LEUM_1546
Aminopyrimidine aminohydrolase
LEUM_1546
Single gene
DOOR ID:
1891030
LEUM_1546
View Structure
18
1672246-1672372
(-)
SAM
1670984-1672142 (-)
LEUM_1697
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
LEUM_1697
Operon
DOOR ID:
230525
LEUM_1696,
LEUM_1697
View Structure
19
1823864-1824031
(-)
lysine
1822350-1823790 (-)
LEUM_1849
Lysine:proton symporter; AAT family
LEUM_1849
Single gene
DOOR ID:
1891103
LEUM_1849
View Structure
20
1882072-1882171
(+)
ykkC-yxkD
1882224-1882596 (+)
LEUM_1913
LEUM_1913
Single gene
DOOR ID:
1891143
LEUM_1913
View Structure
21
1913215-1913383
(-)
lysine
1912004-1913117 (-)
LEUM_1941
Alanine racemase
LEUM_1941
Operon
DOOR ID:
230580
LEUM_1940,
LEUM_1941
View Structure
Genome:
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
(
NC_008531.1
);
Phylum:
Firmicutes
a:22:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"123967-124099";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"124135-124693";i:10;s:1:"+";i:11;s:9:"LEUM_0142";i:12;s:65:"Folate transporter FolT (Folate ECF transporter S component FolT)";i:13;s:9:"LEUM_0142";i:14;s:6:"Operon";i:15;s:6:"230201";i:16;s:19:"LEUM_0142;LEUM_0143";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"444243-444333";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"444477-445257";i:10;s:1:"+";i:11;s:9:"LEUM_0485";i:12;s:110:"Hydroxyethylthiazole kinase 1 (0) (4-methyl-5-beta-hydroxyethylthiazole kinase 1) (TH kinase 1) (Thz kinase 1)";i:13;s:9:"LEUM_0485";i:14;s:6:"Operon";i:15;s:6:"230266";i:16;s:29:"LEUM_0485;LEUM_0486;LEUM_0487";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"611903-611999";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"612222-613365";i:10;s:1:"+";i:11;s:9:"LEUM_0645";i:12;s:14:"GMP reductase ";i:13;s:9:"LEUM_0645";i:14;s:6:"Operon";i:15;s:6:"230302";i:16;s:19:"LEUM_0645;LEUM_0646";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"635548-635716";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"635799-637092";i:10;s:1:"+";i:11;s:9:"LEUM_0667";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"LEUM_0667";i:14;s:6:"Operon";i:15;s:6:"230305";i:16;s:49:"LEUM_0667;LEUM_0668;LEUM_0669;LEUM_0670;LEUM_0671";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"737024-737067";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"737113-738100";i:10;s:1:"+";i:11;s:9:"LEUM_0759";i:12;s:42:"Inosine-uridine nucleoside N-ribohydrolase";i:13;s:9:"LEUM_0759";i:14;s:6:"Operon";i:15;s:6:"230326";i:16;s:19:"LEUM_0759;LEUM_0760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"745322-745411";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"744421-745003";i:10;s:1:"-";i:11;s:9:"LEUM_0769";i:12;s:26:"Predicted membrane protein";i:13;s:9:"LEUM_0769";i:14;s:6:"Operon";i:15;s:6:"230328";i:16;s:39:"LEUM_0766;LEUM_0767;LEUM_0768;LEUM_0769";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"807573-807710";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"807832-808867";i:10;s:1:"+";i:11;s:9:"LEUM_0822";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"LEUM_0822";i:14;s:6:"Operon";i:15;s:6:"230342";i:16;s:45:"LEUM_0822;LEUM_0823;LEUM_0824;LEUM_0825(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"918761-918860";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:13:"919117-919792";i:10;s:1:"+";i:11;s:9:"LEUM_0917";i:12;s:42:"Predicted hydrolase of the HAD superfamily";i:13;s:9:"LEUM_0917";i:14;s:11:"Single gene";i:15;s:7:"1890848";i:16;s:9:"LEUM_0917";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"935688-935777";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:13:"936037-937324";i:10;s:1:"+";i:11;s:9:"LEUM_0933";i:12;s:24:"Xanthine/uracil permease";i:13;s:9:"LEUM_0933";i:14;s:6:"Operon";i:15;s:6:"230367";i:16;s:99:"LEUM_0933;LEUM_0934;LEUM_0935;LEUM_0936;LEUM_0937;LEUM_0938;LEUM_0939;LEUM_0940;LEUM_0941;LEUM_0942";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"935860-935959";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:13:"936037-937324";i:10;s:1:"+";i:11;s:9:"LEUM_0933";i:12;s:24:"Xanthine/uracil permease";i:13;s:9:"LEUM_0933";i:14;s:6:"Operon";i:15;s:6:"230367";i:16;s:99:"LEUM_0933;LEUM_0934;LEUM_0935;LEUM_0936;LEUM_0937;LEUM_0938;LEUM_0939;LEUM_0940;LEUM_0941;LEUM_0942";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"980640-980728";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"980816-981164";i:10;s:1:"+";i:11;s:9:"LEUM_0981";i:12;s:61:"N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase";i:13;s:9:"LEUM_0981";i:14;s:6:"Operon";i:15;s:6:"230374";i:16;s:19:"LEUM_0981;LEUM_0982";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1156492-1156582";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1155721-1156360";i:10;s:1:"-";i:11;s:4:"thiE";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:9:"LEUM_1159";i:14;s:6:"Operon";i:15;s:6:"230414";i:16;s:51:"LEUM_1156(thiG);LEUM_1157;LEUM_1158;LEUM_1159(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1235002-1235047";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1234437-1234995";i:10;s:1:"-";i:11;s:4:"fabG";i:12;s:26:"Predicted membrane protein";i:13;s:9:"LEUM_1240";i:14;s:6:"Operon";i:15;s:6:"230432";i:16;s:25:"LEUM_1239(fabG);LEUM_1240";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1284677-1284813";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1283987-1284578";i:10;s:1:"-";i:11;s:9:"LEUM_1295";i:12;s:73:"Riboflavin transporter RibU (Riboflavin ECF transporter S component RibU)";i:13;s:9:"LEUM_1295";i:14;s:11:"Single gene";i:15;s:7:"1890952";i:16;s:9:"LEUM_1295";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1448857-1448964";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1448276-1448747";i:10;s:1:"-";i:11;s:9:"LEUM_1455";i:12;s:36:"Nucleoside 2-deoxyribosyltransferase";i:13;s:9:"LEUM_1455";i:14;s:6:"Operon";i:15;s:6:"230474";i:16;s:29:"LEUM_1453;LEUM_1454;LEUM_1455";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1546926-1547014";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1546211-1546802";i:10;s:1:"-";i:11;s:9:"LEUM_1545";i:12;s:52:"ABC-type cobalt transport system; membrane component";i:13;s:9:"LEUM_1545";i:14;s:6:"Operon";i:15;s:6:"230495";i:16;s:39:"LEUM_1542;LEUM_1543;LEUM_1544;LEUM_1545";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1547147-1547249";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1547323-1548028";i:10;s:1:"+";i:11;s:9:"LEUM_1546";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"LEUM_1546";i:14;s:11:"Single gene";i:15;s:7:"1891030";i:16;s:9:"LEUM_1546";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_008531.1";i:2;s:57:"Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1672246-1672372";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1670984-1672142";i:10;s:1:"-";i:11;s:9:"LEUM_1697";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine 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