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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
88628-88717
(-)
TPP
88018-88603 (-)
LGAS_0073
LGAS_0073
Operon
DOOR ID:
229826
LGAS_0071,
LGAS_0072,
LGAS_0073
View Structure
2
101082-101255
(-)
lysine
99353-100967 (-)
LGAS_0086
LGAS_0086
Operon
DOOR ID:
229830
LGAS_0085,
LGAS_0086
View Structure
3
266059-266157
(-)
purine
265408-265987 (-)
LGAS_0229
Xanthine phosphoribosyltransferase (XPRTase) (2)
LGAS_0229
Operon
DOOR ID:
229863
LGAS_0228,
LGAS_0229
View Structure
4
483009-483080
(+)
SMK_box
484269-485733 (+)
LGAS_0457
LGAS_0457
Operon
DOOR ID:
229904
LGAS_0456,
LGAS_0457
View Structure
5
881487-881597
(+)
FMN
881652-882270 (+)
LGAS_0890
LGAS_0890
Operon
DOOR ID:
229976
LGAS_0890,
LGAS_0891
(cmk)
,
LGAS_0892
(rpsA)
,
LGAS_0893
(engA)
View Structure
6
962812-962978
(+)
ykoK
962993-965732 (+)
LGAS_0962
LGAS_0962
Single gene
DOOR ID:
1890352
LGAS_0962
View Structure
7
1279217-1279279
(-)
fluoride
1278324-1279185 (-)
LGAS_1285
LGAS_1285
Operon
DOOR ID:
230051
LGAS_1283,
LGAS_1284,
LGAS_1285
View Structure
8
1589890-1589983
(+)
preQ1-II
1589984-1590728 (+)
LGAS_1629
LGAS_1629
Single gene
DOOR ID:
1890514
LGAS_1629
View Structure
9
1860366-1860463
(+)
purine
1860544-1861861 (+)
LGAS_1869
LGAS_1869
Single gene
DOOR ID:
1890590
LGAS_1869
View Structure
Genome:
Lactobacillus gasseri ATCC 33323
(
NC_008530.1
);
Phylum:
Firmicutes
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