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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
93243-93409
(-)
ykoK
91249-92536 (+)
LVIS_0085
Na+/H+-dicarboxylate symporter
LVIS_0085
Single gene
DOOR ID:
1882336
LVIS_0085
View Structure
2
801083-801200
(+)
FMN
801316-801898 (+)
LVIS_0772
Riboflavin transporter
LVIS_0772
Single gene
DOOR ID:
1882652
LVIS_0772
View Structure
3
852114-852211
(-)
THF
851546-852080 (-)
LVIS_0823
LVIS_0823
Single gene
DOOR ID:
1882673
LVIS_0823
View Structure
4
1495509-1495627
(-)
SMK_box
1492642-1494118 (-)
LVIS_1522
Permease of the major facilitator superfamily
LVIS_1522
Single gene
DOOR ID:
1882901
LVIS_1522
View Structure
5
1624989-1625123
(-)
FMN
1623789-1624860 (-)
LVIS_1653
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
LVIS_1653
Operon
DOOR ID:
226410
LVIS_1650,
LVIS_1651,
LVIS_1652,
LVIS_1653
View Structure
6
1669758-1669940
(-)
lysine
1668140-1669640 (-)
LVIS_1712
Amino acid transporter
LVIS_1712
Single gene
DOOR ID:
1882958
LVIS_1712
View Structure
7
1789940-1790031
(+)
TPP
1790120-1790684 (+)
LVIS_1827
ABC-type cobalt transport system; permease component
LVIS_1827
Operon
DOOR ID:
226439
LVIS_1827,
LVIS_1828,
LVIS_1829,
LVIS_1830
View Structure
8
1798040-1798138
(+)
purine
1798266-1799640 (+)
LVIS_1838
Xanthine/uracil permease
LVIS_1838
Single gene
DOOR ID:
1883023
LVIS_1838
View Structure
9
2061404-2061509
(-)
TPP
2060387-2061176 (-)
LVIS_2099
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
LVIS_2099
Operon
DOOR ID:
226478
LVIS_2097,
LVIS_2098,
LVIS_2099
View Structure
10
2122722-2122885
(-)
ykoK
2121661-2122510 (-)
LVIS_2157
ABC-type anion transport system; duplicated permease component
LVIS_2157
Operon
DOOR ID:
226488
LVIS_2154,
LVIS_2155,
LVIS_2156,
LVIS_2157
View Structure
11
2130784-2130877
(+)
ykkC-yxkD
2130959-2131286 (+)
LVIS_2166
Membrane transporter of cations and cationic drugs
LVIS_2166
Operon
DOOR ID:
226490
LVIS_2166,
LVIS_2167
View Structure
Genome:
Lactobacillus brevis ATCC 367
(
NC_008497.1
);
Phylum:
Firmicutes
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permease component";i:13;s:9:"LVIS_1827";i:14;s:6:"Operon";i:15;s:6:"226439";i:16;s:39:"LVIS_1827;LVIS_1828;LVIS_1829;LVIS_1830";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008497.1";i:2;s:29:"Lactobacillus brevis ATCC 367";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1798040-1798138";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1798266-1799640";i:10;s:1:"+";i:11;s:9:"LVIS_1838";i:12;s:24:"Xanthine/uracil permease";i:13;s:9:"LVIS_1838";i:14;s:11:"Single gene";i:15;s:7:"1883023";i:16;s:9:"LVIS_1838";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008497.1";i:2;s:29:"Lactobacillus brevis ATCC 367";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2061404-2061509";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2060387-2061176";i:10;s:1:"-";i:11;s:9:"LVIS_2099";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"LVIS_2099";i:14;s:6:"Operon";i:15;s:6:"226478";i:16;s:29:"LVIS_2097;LVIS_2098;LVIS_2099";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008497.1";i:2;s:29:"Lactobacillus brevis ATCC 367";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2122722-2122885";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2121661-2122510";i:10;s:1:"-";i:11;s:9:"LVIS_2157";i:12;s:62:"ABC-type anion transport system; duplicated permease component";i:13;s:9:"LVIS_2157";i:14;s:6:"Operon";i:15;s:6:"226488";i:16;s:39:"LVIS_2154;LVIS_2155;LVIS_2156;LVIS_2157";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008497.1";i:2;s:29:"Lactobacillus brevis ATCC 367";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2130784-2130877";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2130959-2131286";i:10;s:1:"+";i:11;s:9:"LVIS_2166";i:12;s:50:"Membrane transporter of cations and cationic drugs";i:13;s:9:"LVIS_2166";i:14;s:6:"Operon";i:15;s:6:"226490";i:16;s:19:"LVIS_2166;LVIS_2167";i:17;s:0:"";i:18;s:15:"View Structure ";}}