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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
498889-498994
(-)
SAH
497456-498866 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PA14_05620
Operon
DOOR ID:
224985
PA14_05590
(metF)
,
PA14_05600,
PA14_05620
(sahH)
View Structure
2
989638-989800
(+)
FMN
989983-990643 (+)
ribC
Riboflavin synthase alpha chain
PA14_11410
Operon
DOOR ID:
225085
PA14_11410
(ribC)
,
PA14_11420
(ribB)
,
PA14_11430
(ribH)
,
PA14_11450
(nusB)
,
PA14_11460
(thiL)
,
PA14_11470
(pgpA)
,
PA14_11480,
PA14_11490
View Structure
3
2263352-2263502
(-)
cobalamin
2261847-2262276 (-)
PA14_25930
Putative cobalamin biosynthesis protein
PA14_25930
Operon
DOOR ID:
225309
PA14_25920
(cobM)
,
PA14_25930
View Structure
4
2263561-2263753
(+)
cobalamin
2263798-2264926 (+)
cobW
Putative cobalamin biosynthesis protein cobW
PA14_25960
Operon
DOOR ID:
225310
PA14_25960,
PA14_25970
(cobN)
View Structure
5
2303609-2303814
(-)
cobalamin
2301353-2303510 (-)
PA14_26420
Putative TonB-dependent receptor
PA14_26420
Operon
DOOR ID:
225316
PA14_26360,
PA14_26390,
PA14_26400,
PA14_26420
View Structure
6
2303972-2304137
(+)
yybP-ykoY
2304146-2304716 (+)
yebN
Putative manganese efflux pump MntP
PA14_26450
Single gene
DOOR ID:
1880961
PA14_26450
View Structure
7
2307921-2308172
(+)
cobalamin
2309628-2310255 (+)
cobH
Precorrin isomerase CobH
PA14_26500
Operon
DOOR ID:
225318
PA14_26485,
PA14_26500
(cobH)
,
PA14_26510
(cobI)
,
PA14_26530
(cobJ)
View Structure
8
2537208-2537252
(-)
mini-ykkC
2536864-2537185 (-)
Bcen2424_2282
Bcen2424_2282
Single gene
DOOR ID:
1898063
Bcen2424_2282
View Structure
9
4252888-4253096
(-)
cobalamin
4250941-4252792 (-)
btuB
Putative tonB-dependent receptor
PA14_47800
Operon
DOOR ID:
225665
PA14_47650
(cobS)
,
PA14_47660,
PA14_47670
(cobT)
,
PA14_47680
(cobU)
,
PA14_47690
(cobQ)
,
PA14_47720
(cobC)
,
PA14_47730
(cobD)
,
PA14_47750,
PA14_47760
(cobB)
,
PA14_47790
(cobO)
,
PA14_47800
View Structure
10
4784334-4784380
(+)
mini-ykkC
4784397-4784715 (+)
sugE
APECO1_2241
Single gene
DOOR ID:
1905117
APECO1_2241
(sugE)
View Structure
11
5078127-5078189
(-)
fluoride
5077678-5078062 (-)
crcB
Putative fluoride ion transporter CrcB
PA14_56980
Operon
DOOR ID:
225811
PA14_56970,
PA14_56980
View Structure
12
5468951-5469074
(+)
yybP-ykoY
5469164-5469743 (+)
PA14_61260
Putative membrane protein
PA14_61260
Single gene
DOOR ID:
1881665
PA14_61260
View Structure
13
5855131-5855267
(-)
TPP
5853157-5855041 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PA14_65740
Single gene
DOOR ID:
1881789
PA14_65740
(thiC)
View Structure
Genome:
Pseudomonas aeruginosa UCBPP-PA14
(
NC_008463.1
);
Phylum:
Gammaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"498889-498994";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"497456-498866";i:10;s:1:"-";i:11;s:4:"sahH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"PA14_05620";i:14;s:6:"Operon";i:15;s:6:"224985";i:16;s:44:"PA14_05590(metF);PA14_05600;PA14_05620(sahH)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"989638-989800";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"989983-990643";i:10;s:1:"+";i:11;s:4:"ribC";i:12;s:31:"Riboflavin synthase alpha chain";i:13;s:10:"PA14_11410";i:14;s:6:"Operon";i:15;s:6:"225085";i:16;s:123:"PA14_11410(ribC);PA14_11420(ribB);PA14_11430(ribH);PA14_11450(nusB);PA14_11460(thiL);PA14_11470(pgpA);PA14_11480;PA14_11490";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2263352-2263502";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2261847-2262276";i:10;s:1:"-";i:11;s:10:"PA14_25930";i:12;s:39:"Putative cobalamin biosynthesis protein";i:13;s:10:"PA14_25930";i:14;s:6:"Operon";i:15;s:6:"225309";i:16;s:27:"PA14_25920(cobM);PA14_25930";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2263561-2263753";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2263798-2264926";i:10;s:1:"+";i:11;s:4:"cobW";i:12;s:44:"Putative cobalamin biosynthesis protein cobW";i:13;s:10:"PA14_25960";i:14;s:6:"Operon";i:15;s:6:"225310";i:16;s:27:"PA14_25960;PA14_25970(cobN)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2303609-2303814";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2301353-2303510";i:10;s:1:"-";i:11;s:10:"PA14_26420";i:12;s:32:"Putative TonB-dependent receptor";i:13;s:10:"PA14_26420";i:14;s:6:"Operon";i:15;s:6:"225316";i:16;s:43:"PA14_26360;PA14_26390;PA14_26400;PA14_26420";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2303972-2304137";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2304146-2304716";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"PA14_26450";i:14;s:11:"Single gene";i:15;s:7:"1880961";i:16;s:10:"PA14_26450";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2307921-2308172";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2309628-2310255";i:10;s:1:"+";i:11;s:4:"cobH";i:12;s:24:"Precorrin isomerase CobH";i:13;s:10:"PA14_26500";i:14;s:6:"Operon";i:15;s:6:"225318";i:16;s:61:"PA14_26485;PA14_26500(cobH);PA14_26510(cobI);PA14_26530(cobJ)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2537208-2537252";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2536864-2537185";i:10;s:1:"-";i:11;s:13:"Bcen2424_2282";i:12;s:0:"";i:13;s:13:"Bcen2424_2282";i:14;s:11:"Single gene";i:15;s:7:"1898063";i:16;s:13:"Bcen2424_2282";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4252888-4253096";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4250941-4252792";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:32:"Putative tonB-dependent receptor";i:13;s:10:"PA14_47800";i:14;s:6:"Operon";i:15;s:6:"225665";i:16;s:168:"PA14_47650(cobS);PA14_47660;PA14_47670(cobT);PA14_47680(cobU);PA14_47690(cobQ);PA14_47720(cobC);PA14_47730(cobD);PA14_47750;PA14_47760(cobB);PA14_47790(cobO);PA14_47800";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4784334-4784380";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4784397-4784715";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:11:"APECO1_2241";i:14;s:11:"Single gene";i:15;s:7:"1905117";i:16;s:17:"APECO1_2241(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5078127-5078189";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"5077678-5078062";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"PA14_56980";i:14;s:6:"Operon";i:15;s:6:"225811";i:16;s:21:"PA14_56970;PA14_56980";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5468951-5469074";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5469164-5469743";i:10;s:1:"+";i:11;s:10:"PA14_61260";i:12;s:25:"Putative membrane protein";i:13;s:10:"PA14_61260";i:14;s:11:"Single gene";i:15;s:7:"1881665";i:16;s:10:"PA14_61260";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008463.1";i:2;s:34:"Pseudomonas aeruginosa UCBPP-PA14 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5855131-5855267";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5853157-5855041";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"PA14_65740";i:14;s:11:"Single gene";i:15;s:7:"1881789";i:16;s:16:"PA14_65740(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}