RiboswitchDB

Genome: Burkholderia ambifaria AMMD chromosome II (NC_008391.1); Phylum: Betaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

778547-778740 (+)

cobalamin

778949-780878 (+)

Bamb_3886

TonB-dependent receptor

Single gene

DOOR ID: 1876546

Bamb_3886

2

1625216-1625358 (-)

cobalamin

1624972-1625182 (-)

Bamb_4649

Operon

DOOR ID: 223598

Bamb_4648,
Bamb_4649

3

2103975-2104005 (+)

glutamine

2105457-2106363 (+)

Bamb_5082

Transcriptional regulator; LysR family

Single gene

DOOR ID: 1877119

Bamb_5082

4

2215753-2215897 (-)

yybP-ykoY

2214627-2215638 (-)

Bamb_5184

Sodium/calcium exchanger membrane region

Single gene

DOOR ID: 1877170

Bamb_5184

5

2589399-2589502 (+)

fluoride

2589581-2590823 (+)

Bamb_5519

Cl-channel; voltage-gated family protein

Operon

DOOR ID: 223756

Bamb_5519,
Bamb_5520,
Bamb_5521

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";}}