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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
44124-44251
(+)
yybP-ykoY
44320-44866 (+)
Neut_0042
Putative manganese efflux pump MntP
Neut_0042
Single gene
DOOR ID:
1864794
Neut_0042
View Structure
2
197403-197509
(-)
TPP
195471-197370 (-)
Neut_0196
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Neut_0196
Operon
DOOR ID:
217884
Neut_0195,
Neut_0196
View Structure
3
221202-221369
(-)
yybP-ykoY
220616-221195 (-)
Neut_0215
Neut_0215
Operon
DOOR ID:
217889
Neut_0214,
Neut_0215
View Structure
4
861306-861386
(-)
c-di-GMP-I
859101-861222 (-)
Neut_0841
Peptidase S8 and S53; subtilisin; kexin; sedolisin
Neut_0841
single gene
DOOR ID:
1865069
Neut_0841
View Structure
5
2008713-2008790
(-)
SAH
2007259-2008696 (-)
Neut_1892
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Neut_1892
Single gene
DOOR ID:
1865444
Neut_1892
View Structure
6
2027042-2027265
(+)
cobalamin
2027387-2029226 (+)
Neut_1916
TonB-dependent vitamin B12 receptor
Neut_1916
Operon
DOOR ID:
218240
Neut_1916,
Neut_1917,
Neut_1918
View Structure
7
2070201-2070299
(-)
glycine
2069015-2070107 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Neut_1955
Single gene
DOOR ID:
1865470
Neut_1955
(gcvT)
View Structure
8
2598146-2598249
(-)
ykkC-yxkD
2594262-2597883 (-)
Neut_2470
Urea amidolyase related protein (4)
Neut_2470
Single gene
DOOR ID:
1865659
Neut_2470
View Structure
9
2598462-2598562
(+)
ykkC-yxkD
2598828-2600367 (+)
Neut_2472
Amino acid/polyamine/organocation transporter; APC superfamily
Neut_2472
Operon
DOOR ID:
218355
Neut_2471,
Neut_2472,
Neut_2473,
Neut_2474,
Neut_2475
View Structure
Genome:
Nitrosomonas eutropha C91
(
NC_008344.1
);
Phylum:
Betaproteobacteria
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