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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
147970-148204
(-)
FMN
147103-147757 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Shewmr7_0129
Single gene
DOOR ID:
1860962
Shewmr7_0129
(ribB)
View Structure
2
675036-675125
(+)
c-di-GMP-I
675210-675783 (+)
Shewmr7_0577
Uncharacterized protein
Shewmr7_0577
single gene
DOOR ID:
1861146
Shewmr7_0577
View Structure
3
760584-760818
(+)
cobalamin
760926-762888 (+)
Shewmr7_0651
TonB-dependent siderophore receptor
Shewmr7_0651
Single gene
DOOR ID:
1861200
Shewmr7_0651
View Structure
4
1084152-1084254
(-)
yybP-ykoY
1083507-1084104 (-)
Shewmr7_0946
Shewmr7_0946
Single gene
DOOR ID:
1861329
Shewmr7_0946
View Structure
5
1084468-1084563
(+)
c-di-GMP-I
1084688-1086164 (+)
Shewmr7_0947
GlcNAc-binding protein A
Shewmr7_0947
single gene
DOOR ID:
1861330
Shewmr7_0947
View Structure
6
1640924-1641120
(+)
lysine
1641199-1642768 (+)
Shewmr7_1419
Na+/H+ antiporter NhaC
Shewmr7_1419
Single gene
DOOR ID:
1861544
Shewmr7_1419
View Structure
7
1967323-1967374
(-)
mini-ykkC
1966570-1967305 (-)
GbCGDNIH1_1747
GbCGDNIH1_1747
Operon
DOOR ID:
217695
GbCGDNIH1_1744,
GbCGDNIH1_1745,
GbCGDNIH1_1746,
GbCGDNIH1_1747
View Structure
8
2477491-2477589
(-)
TPP
2475169-2477332 (-)
Shewmr7_2097
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Shewmr7_2097
Operon
DOOR ID:
216385
Shewmr7_2092
(thiH)
,
Shewmr7_2093
(thiG)
,
Shewmr7_2094,
Shewmr7_2095,
Shewmr7_2096,
Shewmr7_2097
View Structure
9
2822434-2822544
(-)
TPP
2820133-2822380 (-)
Shewmr7_2380
TonB-dependent receptor
Shewmr7_2380
Single gene
DOOR ID:
1862025
Shewmr7_2380
View Structure
10
3427655-3427742
(-)
c-di-GMP-I
3424940-3427547 (-)
Shewmr7_2888
Chitinase. Glycosyl Hydrolase family 18
Shewmr7_2888
single gene
DOOR ID:
1862300
Shewmr7_2888
View Structure
11
3758196-3758355
(-)
cobalamin
3757097-3758063 (-)
Shewmr7_3182
ABC transporter related
Shewmr7_3182
Operon
DOOR ID:
216581
Shewmr7_3181,
Shewmr7_3182
View Structure
12
3918193-3918317
(-)
glycine
3916682-3918041 (-)
Shewmr7_3308
Amino acid carrier protein
Shewmr7_3308
Single gene
DOOR ID:
1862496
Shewmr7_3308
View Structure
13
3985220-3985394
(-)
lysine
3983720-3985076 (-)
Shewmr7_3369
Aspartokinase
Shewmr7_3369
Operon
DOOR ID:
216611
Shewmr7_3368,
Shewmr7_3369
View Structure
14
4455368-4455501
(-)
MOCO
4453807-4454287 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Shewmr7_3747
Operon
DOOR ID:
216673
Shewmr7_3742,
Shewmr7_3743,
Shewmr7_3744,
Shewmr7_3745,
Shewmr7_3746,
Shewmr7_3747
(moaC)
,
Shewmr7_3748
(moaA)
View Structure
Genome:
Shewanella sp. MR-7
(
NC_008322.1
);
Phylum:
Gammaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"147970-148204";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"147103-147757";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:12:"Shewmr7_0129";i:14;s:11:"Single gene";i:15;s:7:"1860962";i:16;s:18:"Shewmr7_0129(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"675036-675125";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"675210-675783";i:10;s:1:"+";i:11;s:12:"Shewmr7_0577";i:12;s:23:"Uncharacterized protein";i:13;s:12:"Shewmr7_0577";i:14;s:11:"single gene";i:15;s:7:"1861146";i:16;s:12:"Shewmr7_0577";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"760584-760818";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"760926-762888";i:10;s:1:"+";i:11;s:12:"Shewmr7_0651";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:12:"Shewmr7_0651";i:14;s:11:"Single gene";i:15;s:7:"1861200";i:16;s:12:"Shewmr7_0651";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1084152-1084254";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1083507-1084104";i:10;s:1:"-";i:11;s:12:"Shewmr7_0946";i:12;s:0:"";i:13;s:12:"Shewmr7_0946";i:14;s:11:"Single gene";i:15;s:7:"1861329";i:16;s:12:"Shewmr7_0946";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1084468-1084563";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1084688-1086164";i:10;s:1:"+";i:11;s:12:"Shewmr7_0947";i:12;s:24:"GlcNAc-binding protein A";i:13;s:12:"Shewmr7_0947";i:14;s:11:"single gene";i:15;s:7:"1861330";i:16;s:12:"Shewmr7_0947";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1640924-1641120";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1641199-1642768";i:10;s:1:"+";i:11;s:12:"Shewmr7_1419";i:12;s:22:"Na+/H+ antiporter NhaC";i:13;s:12:"Shewmr7_1419";i:14;s:11:"Single gene";i:15;s:7:"1861544";i:16;s:12:"Shewmr7_1419";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1967323-1967374";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1966570-1967305";i:10;s:1:"-";i:11;s:14:"GbCGDNIH1_1747";i:12;s:0:"";i:13;s:14:"GbCGDNIH1_1747";i:14;s:6:"Operon";i:15;s:6:"217695";i:16;s:59:"GbCGDNIH1_1744;GbCGDNIH1_1745;GbCGDNIH1_1746;GbCGDNIH1_1747";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2477491-2477589";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2475169-2477332";i:10;s:1:"-";i:11;s:12:"Shewmr7_2097";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"Shewmr7_2097";i:14;s:6:"Operon";i:15;s:6:"216385";i:16;s:89:"Shewmr7_2092(thiH);Shewmr7_2093(thiG);Shewmr7_2094;Shewmr7_2095;Shewmr7_2096;Shewmr7_2097";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2822434-2822544";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2820133-2822380";i:10;s:1:"-";i:11;s:12:"Shewmr7_2380";i:12;s:23:"TonB-dependent receptor";i:13;s:12:"Shewmr7_2380";i:14;s:11:"Single gene";i:15;s:7:"1862025";i:16;s:12:"Shewmr7_2380";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3427655-3427742";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3424940-3427547";i:10;s:1:"-";i:11;s:12:"Shewmr7_2888";i:12;s:39:"Chitinase. Glycosyl Hydrolase family 18";i:13;s:12:"Shewmr7_2888";i:14;s:11:"single gene";i:15;s:7:"1862300";i:16;s:12:"Shewmr7_2888";i:17;s:82:"carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3758196-3758355";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3757097-3758063";i:10;s:1:"-";i:11;s:12:"Shewmr7_3182";i:12;s:23:"ABC transporter related";i:13;s:12:"Shewmr7_3182";i:14;s:6:"Operon";i:15;s:6:"216581";i:16;s:25:"Shewmr7_3181;Shewmr7_3182";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3918193-3918317";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3916682-3918041";i:10;s:1:"-";i:11;s:12:"Shewmr7_3308";i:12;s:26:"Amino acid carrier protein";i:13;s:12:"Shewmr7_3308";i:14;s:11:"Single gene";i:15;s:7:"1862496";i:16;s:12:"Shewmr7_3308";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3985220-3985394";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3983720-3985076";i:10;s:1:"-";i:11;s:12:"Shewmr7_3369";i:12;s:14:"Aspartokinase ";i:13;s:12:"Shewmr7_3369";i:14;s:6:"Operon";i:15;s:6:"216611";i:16;s:25:"Shewmr7_3368;Shewmr7_3369";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_008322.1";i:2;s:20:"Shewanella sp. MR-7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4455368-4455501";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"4453807-4454287";i:10;s:1:"-";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:12:"Shewmr7_3747";i:14;s:6:"Operon";i:15;s:6:"216673";i:16;s:102:"Shewmr7_3742;Shewmr7_3743;Shewmr7_3744;Shewmr7_3745;Shewmr7_3746;Shewmr7_3747(moaC);Shewmr7_3748(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}}
