Genome: Shewanella sp. MR-4 (NC_008321.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 152960-153194 (-)FMN152093-152747 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		Shewmr4_0135Single gene

DOOR ID: 1858895		Shewmr4_0135 (ribB) View Structure
2 294832-294965 (+)MOCO296045-296525 (+)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)		Shewmr4_0274Operon

DOOR ID: 215356		Shewmr4_0273 (moaA),
Shewmr4_0274 (moaC),
Shewmr4_0275,
Shewmr4_0276,
Shewmr4_0277,
Shewmr4_0278,
Shewmr4_0279		 View Structure
3 760710-760884 (+)lysine761027-762383 (+)Shewmr4_0653

Shewmr4_0653Operon

DOOR ID: 215419		Shewmr4_0653,
Shewmr4_0654		 View Structure
4 828004-828129 (+)glycine828280-829639 (+)Shewmr4_0714

Shewmr4_0714Single gene

DOOR ID: 1859160		Shewmr4_0714 View Structure
5 994582-994741 (+)cobalamin994873-995839 (+)Shewmr4_0840

Shewmr4_0840Operon

DOOR ID: 215451		Shewmr4_0840,
Shewmr4_0841		 View Structure
6 1569505-1569701 (+)lysine1569780-1571349 (+)Shewmr4_1354

Shewmr4_1354Single gene

DOOR ID: 1859459		Shewmr4_1354 View Structure
7 2185316-2185364 (-)mini-ykkC2184650-2185211 (-)Mlg_1917

Mlg_1917Single gene

DOOR ID: 1863580		Mlg_1917 View Structure
8 2239340-2239438 (+)TPP2239596-2241759 (+)Shewmr4_1881

Shewmr4_1881Operon

DOOR ID: 215642		Shewmr4_1881,
Shewmr4_1882,
Shewmr4_1883,
Shewmr4_1884,
Shewmr4_1885 (thiG),
Shewmr4_1886 (thiH)		 View Structure
9 2758388-2758498 (-)TPP2756135-2758334 (-)Shewmr4_2310

Shewmr4_2310Single gene

DOOR ID: 1859949		Shewmr4_2310 View Structure
10 3357290-3357377 (-)c-di-GMP-I3354575-3357182 (-)Shewmr4_2805

Shewmr4_2805single gene

DOOR ID: 1860213		Shewmr4_2805 View Structure
11 3621532-3621627 (-)c-di-GMP-I3619930-3621406 (-)Shewmr4_3027

Shewmr4_3027single gene

DOOR ID: 1860312		Shewmr4_3027 View Structure
12 3621841-3621943 (+)yybP-ykoY3621990-3622587 (+)Shewmr4_3028

Shewmr4_3028Single gene

DOOR ID: 1860313		Shewmr4_3028 View Structure
13 3944128-3944359 (-)cobalamin3942057-3944019 (-)Shewmr4_3302

Shewmr4_3302Single gene

DOOR ID: 1860448		Shewmr4_3302 View Structure
14 4029328-4029417 (-)c-di-GMP-I4028669-4029242 (-)Shewmr4_3376

Shewmr4_3376single gene

DOOR ID: 1860501		Shewmr4_3376 View Structure