About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
135135-135243
(+)
TPP
135288-136686 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
sync_0129
Single gene
DOOR ID:
1858606
sync_0129
(thiC)
View Structure
2
1594905-1595055
(-)
cobalamin
1594260-1594893 (-)
sync_1754
Putative membrane protein
sync_1754
Single gene
DOOR ID:
1858672
sync_1754
View Structure
Genome:
Synechococcus sp. CC9311
(
NC_008319.1
);
Phylum:
Cyanobacteria/Melainabacteria group
a:3:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008319.1";i:2;s:24:"Synechococcus sp. CC9311";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"135135-135243";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"135288-136686";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"sync_0129";i:14;s:11:"Single gene";i:15;s:7:"1858606";i:16;s:15:"sync_0129(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008319.1";i:2;s:24:"Synechococcus sp. CC9311";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"1594905-1595055";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1594260-1594893";i:10;s:1:"-";i:11;s:9:"sync_1754";i:12;s:25:"Putative membrane protein";i:13;s:9:"sync_1754";i:14;s:11:"Single gene";i:15;s:7:"1858672";i:16;s:9:"sync_1754";i:17;s:0:"";i:18;s:15:"View Structure ";}}
