About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
248094-248195
(+)
TPP
248295-250176 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
H16_A0235
Single gene
DOOR ID:
1855319
H16_A0235
(thiC)
View Structure
2
256130-256245
(+)
SAH
256367-257786 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
H16_A0244
Operon
DOOR ID:
213508
H16_A0244
(ahcY)
,
H16_A0245
(h16_A0245)
,
H16_A0246
(h16_A0246)
,
H16_A0247
(h16_A0247)
View Structure
3
1106807-1107011
(-)
yybP-ykoY
1106165-1106798 (-)
h16_A1011
Predicted membrane protein
H16_A1011
Single gene
DOOR ID:
1855601
H16_A1011
(h16_A1011)
View Structure
4
1715744-1715801
(-)
SAH
1711526-1712753 (-)
h16_A1581
Predicted signal transduction protein containingan EAL domain
H16_A1581
Single gene
DOOR ID:
1855792
H16_A1581
(h16_A1581)
View Structure
5
2917751-2917862
(+)
yybP-ykoY
2917984-2918686 (+)
terC1
Membrane protein TerC; possibly involved in tellurium resistance
H16_A2702
Operon
DOOR ID:
213998
H16_A2702
(terC1)
,
H16_A2703
(thyA)
,
H16_A2704
(folA2)
View Structure
6
3060261-3060406
(+)
ZMP-ZTP
3060530-3061778 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
H16_A2834
Single gene
DOOR ID:
1856278
H16_A2834
(glyA)
View Structure
7
3890148-3890235
(+)
glycine
3890480-3891608 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
H16_A3619
Operon
DOOR ID:
214203
H16_A3619
(gcvT)
,
H16_A3620
(gcvH)
,
H16_A3621
(gcvP)
View Structure
8
3890257-3890382
(+)
glycine
3890480-3891608 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
H16_A3619
Operon
DOOR ID:
214203
H16_A3619
(gcvT)
,
H16_A3620
(gcvH)
,
H16_A3621
(gcvP)
View Structure
Genome:
Ralstonia eutropha H16 chromosome I
(
NC_008313.1
);
Phylum:
Betaproteobacteria
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008313.1";i:2;s:35:"Ralstonia eutropha H16 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"248094-248195";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"248295-250176";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"H16_A0235";i:14;s:11:"Single gene";i:15;s:7:"1855319";i:16;s:15:"H16_A0235(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008313.1";i:2;s:35:"Ralstonia eutropha H16 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"256130-256245";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"256367-257786";i:10;s:1:"+";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"H16_A0244";i:14;s:6:"Operon";i:15;s:6:"213508";i:16;s:78:"H16_A0244(ahcY);H16_A0245(h16_A0245);H16_A0246(h16_A0246);H16_A0247(h16_A0247)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008313.1";i:2;s:35:"Ralstonia eutropha H16 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1106807-1107011";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1106165-1106798";i:10;s:1:"-";i:11;s:9:"h16_A1011";i:12;s:26:"Predicted membrane protein";i:13;s:9:"H16_A1011";i:14;s:11:"Single gene";i:15;s:7:"1855601";i:16;s:20:"H16_A1011(h16_A1011)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008313.1";i:2;s:35:"Ralstonia eutropha H16 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1715744-1715801";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1711526-1712753";i:10;s:1:"-";i:11;s:9:"h16_A1581";i:12;s:61:"Predicted signal transduction protein containingan EAL domain";i:13;s:9:"H16_A1581";i:14;s:11:"Single gene";i:15;s:7:"1855792";i:16;s:20:"H16_A1581(h16_A1581)";i:17;s:52:"phosphorelay signal transduction system [GO:0000160]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008313.1";i:2;s:35:"Ralstonia eutropha H16 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2917751-2917862";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2917984-2918686";i:10;s:1:"+";i:11;s:5:"terC1";i:12;s:64:"Membrane protein TerC; possibly involved in tellurium resistance";i:13;s:9:"H16_A2702";i:14;s:6:"Operon";i:15;s:6:"213998";i:16;s:49:"H16_A2702(terC1);H16_A2703(thyA);H16_A2704(folA2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008313.1";i:2;s:35:"Ralstonia eutropha H16 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3060261-3060406";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3060530-3061778";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"H16_A2834";i:14;s:11:"Single gene";i:15;s:7:"1856278";i:16;s:15:"H16_A2834(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008313.1";i:2;s:35:"Ralstonia eutropha H16 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3890148-3890235";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3890480-3891608";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"H16_A3619";i:14;s:6:"Operon";i:15;s:6:"214203";i:16;s:47:"H16_A3619(gcvT);H16_A3620(gcvH);H16_A3621(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008313.1";i:2;s:35:"Ralstonia eutropha H16 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3890257-3890382";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3890480-3891608";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"H16_A3619";i:14;s:6:"Operon";i:15;s:6:"214203";i:16;s:47:"H16_A3619(gcvT);H16_A3620(gcvH);H16_A3621(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}
