Genome: Clostridium perfringens SM101 (NC_008262.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 175590-175672 (+)c-di-GMP-II175734-177909 (+)CPR_0144

Cell wall surface anchor family protein		CPR_0144Operon

DOOR ID: 210118		CPR_0144,
CPR_0145		 View Structure
2 223631-223832 (+)cobalamin224118-224862 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CPR_0182Operon

DOOR ID: 210123		CPR_0182 (cbiM),
CPR_0183,
CPR_0184 (cbiQ),
CPR_0185 (cbiO)		 View Structure
3 374387-374489 (+)purine374724-375297 (+)xpt

Xanthine phosphoribosyltransferase 1 (XPRTase 1) (2)		CPR_0313Single gene

DOOR ID: 1842236		CPR_0313 (xpt) View Structure
4 470760-470861 (-)purine469141-470500 (-)CPR_0384

Uracil-xanthine permease		CPR_0384Single gene

DOOR ID: 1842581		CPR_0384 View Structure
5 628810-628927 (+)FMN629199-630297 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CPR_0530Operon

DOOR ID: 210184		CPR_0530 (ribD),
CPR_0531 (ribE)		 View Structure
6 656850-656909 (+)fluoride656993-658307 (+)CPR_0556

Voltage-gated chloride channel family protein		CPR_0556Single gene

DOOR ID: 1843434		CPR_0556 View Structure
7 668433-668604 (+)lysine668734-670030 (+)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		CPR_0562Single gene

DOOR ID: 1842741		CPR_0562 (lysA) View Structure
8 786333-786437 (+)TPP786585-787896 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CPR_0668Single gene

DOOR ID: 1843268		CPR_0668 (thiC) View Structure
9 1060071-1060169 (-)ykkC-yxkD1059784-1059958 (-)CPR_0925

CPR_0925Operon

DOOR ID: 210246		CPR_0924,
CPR_0925		 View Structure
10 1258902-1259079 (+)cobalamin1259374-1260292 (+)CPR_1115

Iron compound ABC transporter; iron-binding protein		CPR_1115Operon

DOOR ID: 210270		CPR_1115,
CPR_1116,
CPR_1117,
CPR_1118,
CPR_1119 (cobQ)		 View Structure
11 1333081-1333255 (-)lysine1331486-1332956 (-)CPR_1182

Putative lysine-specific permease		CPR_1182Single gene

DOOR ID: 1843377		CPR_1182 View Structure
12 1394649-1394828 (-)cobalamin1393684-1394527 (-)cbiC

Sirohydrochlorin cobaltochelatase 		CPR_1242Operon

DOOR ID: 210288		CPR_1236 (cobM),
CPR_1237 (cobI),
CPR_1238 (cbiT),
CPR_1239 (cbiE),
CPR_1240 (cbiD),
CPR_1241 (cbiC),
CPR_1242		 View Structure
13 1445126-1445209 (-)c-di-GMP-I1440591-1444989 (-)CPR_1278

Leucine Rich Repeat domain protein		CPR_1278single gene

DOOR ID: 1842627		CPR_1278 View Structure
14 1477245-1477418 (-)cobalamin1476358-1476874 (-)CPR_1305

Putative membrane protein		CPR_1305Operon

DOOR ID: 210296		CPR_1304,
CPR_1305		 View Structure
15 1510028-1510137 (-)TPP1509156-1509951 (-)thiD

Phosphomethylpyrimidine kinase 		CPR_1338Operon

DOOR ID: 210302		CPR_1336 (thiE),
CPR_1337 (thiM),
CPR_1338 (thiD)		 View Structure
16 1535439-1535543 (+)TPP1535634-1536330 (+)CPR_1364

Probable proton-coupled thiamine transporter YuaJ		CPR_1364Single gene

DOOR ID: 1842642		CPR_1364 View Structure
17 1585402-1585499 (-)glycine1583945-1585334 (-)CPR_1408

Sodium:alanine symporter family protein		CPR_1408Single gene

DOOR ID: 1842218		CPR_1408 View Structure
18 1764375-1764478 (-)TPP1764054-1764249 (-)thiS

Thiamine biosynthesis protein ThiS		CPR_1573Single gene

DOOR ID: 1842214		CPR_1573 (thiS) View Structure
19 1962561-1962720 (-)MOCO1961191-1962412 (-)moeA

Molybdopterin biosynthesis protein MoeA		CPR_1763Operon

DOOR ID: 210375		CPR_1762,
CPR_1763 (moeA)		 View Structure
20 2178437-2178481 (-)PreQ12177129-2178110 (-)CPR_1971

Nucleoside hydrolase; IUNH family		CPR_1971Operon

DOOR ID: 210414		CPR_1969,
CPR_1970,
CPR_1971		 View Structure
21 2364701-2364818 (-)FMN2363977-2364574 (-)CPR_2135

Riboflavin transporter		CPR_2135Single gene

DOOR ID: 1842826		CPR_2135 View Structure
22 2380566-2380671 (-)SAM2379143-2380319 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CPR_2145Single gene

DOOR ID: 1842850		CPR_2145 (metK) View Structure
23 2482528-2482625 (-)purine2480885-2482340 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CPR_2261Operon

DOOR ID: 210466		CPR_2260 (guaA),
CPR_2261 (guaB)		 View Structure
24 2530863-2531026 (-)SAM2529449-2530763 (-)CPR_2303

Na+/H+ antiporter family protein		CPR_2303Single gene

DOOR ID: 1842501		CPR_2303 View Structure
25 2544027-2544242 (-)glmS2542111-2543944 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CPR_2322Operon

DOOR ID: 210474		CPR_2321,
CPR_2322 (glmS)		 View Structure
26 2734980-2735079 (-)purine2733867-2734866 (-)add

Adenosine deaminase (Adenosine aminohydrolase)		CPR_2515Single gene

DOOR ID: 1842529		CPR_2515 (add) View Structure
27 2759254-2759423 (-)lysine2757377-2759093 (-)CPR_2536

Na+/H+ antiporter family protein		CPR_2536Single gene

DOOR ID: 1843414		CPR_2536 View Structure