Genome: Clostridium perfringens ATCC 13124 (NC_008261.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 171340-171423 (+)c-di-GMP-II171484-173662 (+)CPF_0146

Cell wall surface anchor family protein		CPF_0146Operon

DOOR ID: 209629		CPF_0146,
CPF_0147		 View Structure
2 223115-223315 (+)cobalamin223601-224345 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CPF_0185Operon

DOOR ID: 209635		CPF_0185 (cbiM),
CPF_0186 (cbiN),
CPF_0187 (cbiQ),
CPF_0188 (cbiO)		 View Structure
3 378776-378878 (+)purine379115-379688 (+)xpt

Xanthine phosphoribosyltransferase 1 (XPRTase 1) (2)		CPF_0319Single gene

DOOR ID: 1841181		CPF_0319 (xpt) View Structure
4 465590-465691 (-)purine463972-465331 (-)CPF_0385

Uracil-xanthine permease		CPF_0385Single gene

DOOR ID: 1841619		CPF_0385 View Structure
5 651467-651582 (+)FMN651932-653048 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CPF_0546Operon

DOOR ID: 209695		CPF_0546 (ribD),
CPF_0547 (ribE)		 View Structure
6 678979-679038 (+)fluoride679122-680436 (+)CPF_0570

Voltage-gated chloride channel family protein		CPF_0570Single gene

DOOR ID: 1841687		CPF_0570 View Structure
7 690182-690353 (+)lysine690484-691780 (+)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		CPF_0576Single gene

DOOR ID: 1841671		CPF_0576 (lysA) View Structure
8 797381-797485 (+)TPP797634-798945 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CPF_0670Single gene

DOOR ID: 1840972		CPF_0670 (thiC) View Structure
9 1189375-1189473 (-)ykkC-yxkD1188619-1189324 (-)CPF_1040

CPF_1040Operon

DOOR ID: 209771		CPF_1039,
CPF_1040		 View Structure
10 1218268-1218355 (+)c-di-GMP-I1218550-1224979 (+)CPF_1073

Discoidin domain protein		CPF_1073single gene

DOOR ID: 1842127		CPF_1073 View Structure
11 1253929-1254108 (+)cobalamin1256109-1256430 (+)CPF_1100

CPF_1100Single gene

DOOR ID: 1841023		CPF_1100 View Structure
12 1318169-1318327 (+)ykoK1318653-1321323 (+)mgtA

Magnesium-translocating P-type ATPase 		CPF_1153Operon

DOOR ID: 209784		CPF_1153 (mgtA),
CPF_1154		 View Structure
13 1468649-1468827 (+)cobalamin1469137-1470055 (+)CPF_1296

Iron chelate uptake ABC transporter; FeCT family; solute-binding protein		CPF_1296Operon

DOOR ID: 209803		CPF_1296,
CPF_1297,
CPF_1298,
CPF_1299,
CPF_1300 (cobQ)		 View Structure
14 1547830-1548004 (-)lysine1546234-1547704 (-)CPF_1369

Putative lysine-specific permease		CPF_1369Single gene

DOOR ID: 1841008		CPF_1369 View Structure
15 1617168-1617347 (-)cobalamin1616203-1617046 (-)cbiK

Sirohydrochlorin cobaltochelatase 		CPF_1436Operon

DOOR ID: 209823		CPF_1429 (cbiG),
CPF_1430 (cobM),
CPF_1431 (cobI),
CPF_1432 (cbiT),
CPF_1433 (cbiE),
CPF_1434 (cbiD),
CPF_1435 (cbiC),
CPF_1436 (cbiK)		 View Structure
16 1695613-1695696 (-)c-di-GMP-I1690406-1695470 (-)CPF_1489

F5/8 type C domain protein		CPF_1489single gene

DOOR ID: 1840812		CPF_1489 View Structure
17 1732372-1732545 (-)cobalamin1731486-1732002 (-)CPF_1515

Putative membrane protein		CPF_1515Operon

DOOR ID: 209832		CPF_1514,
CPF_1515		 View Structure
18 1763974-1764083 (-)TPP1763105-1763900 (-)thiD

Phosphomethylpyrimidine kinase 		CPF_1545Operon

DOOR ID: 209839		CPF_1543 (thiE),
CPF_1544 (thiM),
CPF_1545 (thiD)		 View Structure
19 1839500-1839604 (+)TPP1839694-1840390 (+)CPF_1622

Probable proton-coupled thiamine transporter YuaJ		CPF_1622Single gene

DOOR ID: 1840806		CPF_1622 View Structure
20 1892274-1892372 (-)glycine1890816-1892205 (-)CPF_1672

Sodium:alanine symporter family protein		CPF_1672Single gene

DOOR ID: 1841638		CPF_1672 View Structure
21 2092614-2092717 (-)TPP2092291-2092486 (-)thiS

Thiamine biosynthesis protein ThiS		CPF_1856Single gene

DOOR ID: 1841163		CPF_1856 (thiS) View Structure
22 2288391-2288585 (-)MOCO2287021-2288242 (-)moeA

Molybdenum cofactor biosynthesis protein MoeA		CPF_2048Operon

DOOR ID: 209922		CPF_2047,
CPF_2048 (moeA)		 View Structure
23 2509141-2509185 (-)PreQ12507830-2508811 (-)CPF_2260

Nucleoside hydrolase; IUNH family		CPF_2260Operon

DOOR ID: 209962		CPF_2258,
CPF_2259,
CPF_2260		 View Structure
24 2698132-2698249 (-)FMN2697409-2698006 (-)CPF_2425

Riboflavin transporter		CPF_2425Single gene

DOOR ID: 1841267		CPF_2425 View Structure
25 2713996-2714101 (-)SAM2712571-2713747 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CPF_2435Single gene

DOOR ID: 1841276		CPF_2435 (metK) View Structure
26 2822160-2822257 (-)purine2820517-2821972 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CPF_2558Operon

DOOR ID: 210017		CPF_2557 (guaA),
CPF_2558 (guaB)		 View Structure
27 2887697-2887861 (-)SAM2886283-2887597 (-)CPF_2617

Na+/H+ antiporter family protein		CPF_2617Single gene

DOOR ID: 1841124		CPF_2617 View Structure
28 2901598-2901816 (-)glmS2899682-2901515 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CPF_2636Operon

DOOR ID: 210029		CPF_2635,
CPF_2636 (glmS)		 View Structure
29 3093735-3093834 (-)purine3092623-3093622 (-)add

Adenosine deaminase (Adenosine aminohydrolase)		CPF_2829Single gene

DOOR ID: 1840977		CPF_2829 (add) View Structure
30 3117773-3117942 (-)lysine3115892-3117608 (-)CPF_2850

Na+/H+ antiporter family protein		CPF_2850Single gene

DOOR ID: 1840954		CPF_2850 View Structure
31 3139814-3139915 (-)TPP3138929-3139595 (-)tenA

Aminopyrimidine aminohydrolase 		CPF_2870Operon

DOOR ID: 210074		CPF_2869,
CPF_2870 (tenA)		 View Structure