RiboswitchDB

Genome: Alcanivorax borkumensis SK2 (NC_008260.1); Phylum: Gammaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

1985002-1985050 (+)

mini-ykkC

1985064-1985379 (+)

Shewmr7_1683

Single gene

DOOR ID: 1861690

Shewmr7_1683

2

2160939-2161078 (+)

ykkC-yxkD

2161134-2162199 (+)

ABO_1887

Sulfonate ABC transporter periplasmic-binding protein

Single gene

DOOR ID: 1840390

ABO_1887

3

2697103-2697316 (-)

cobalamin

2695117-2696968 (-)

ABO_2371

TonB-dependent receptor protein

Operon

DOOR ID: 209540

ABO_2366 (cobO),
ABO_2367,
ABO_2368,
ABO_2369,
ABO_2370,
ABO_2371

4

2809495-2809663 (-)

yybP-ykoY

2808925-2809486 (-)

ABO_2478

Putative manganese efflux pump MntP

Single gene

DOOR ID: 1840632

ABO_2478

5

3020708-3020884 (+)

yybP-ykoY

3021608-3022148 (+)

ABO_2674

Single gene

DOOR ID: 1840743

ABO_2674

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";}}