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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
128049-128127
(+)
sam-alpha
128167-129358 (+)
Meso_0098
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Meso_0098
Single gene
DOOR ID:
1834938
Meso_0098
View Structure
2
927286-927366
(+)
SAH
927922-928843 (-)
Meso_0836
PfkB
Meso_0836
Single gene
DOOR ID:
1835183
Meso_0836
View Structure
3
2165346-2165394
(+)
mini-ykkC
2165431-2169019 (+)
uahA
ABO_1892
Single gene
DOOR ID:
1840391
ABO_1892
(uahA)
View Structure
4
2215550-2215753
(+)
cobalamin
2215868-2217806 (+)
Meso_2063
TonB-dependent receptor
Meso_2063
Operon
DOOR ID:
207015
Meso_2063,
Meso_2064,
Meso_2065,
Meso_2066
View Structure
5
2750090-2750207
(+)
TPP
2750312-2752139 (+)
Meso_2561
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Meso_2561
Single gene
DOOR ID:
1835891
Meso_2561
View Structure
6
2937284-2937539
(-)
cobalamin
2934882-2937192 (-)
Meso_2701
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Meso_2701
Operon
DOOR ID:
207133
Meso_2700
(ligC)
,
Meso_2701
View Structure
7
2941844-2942047
(-)
cobalamin
2938875-2941740 (-)
Meso_2703
Ribonucleoside-diphosphate reductase
Meso_2703
Single gene
DOOR ID:
1835933
Meso_2703
View Structure
8
3355607-3355684
(-)
sam-alpha
3354614-3355553 (-)
Meso_3083
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Meso_3083
Single gene
DOOR ID:
1836069
Meso_3083
View Structure
9
3522172-3522274
(+)
TPP
3522308-3523307 (+)
tbpA
Thiamine ABC transporter; periplasmic binding protein
Meso_3259
Operon
DOOR ID:
207253
Meso_3259
(tbpA)
,
Meso_3260
(thiP)
,
Meso_3261
View Structure
10
3801882-3802094
(+)
cobalamin
3802577-3807293 (+)
Meso_3532
Outer membrane autotransporter barrel domain
Meso_3532
Single gene
DOOR ID:
1836234
Meso_3532
View Structure
11
4254495-4254583
(-)
glycine
4253781-4254018 (+)
Meso_3948
Transcriptional regulator; AsnC family
Meso_3948
Operon
DOOR ID:
207403
Meso_3948,
Meso_3949
View Structure
Genome:
Chelativorans sp. BNC1
(
NC_008254.1
);
Phylum:
Alphaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"128049-128127";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"128167-129358";i:10;s:1:"+";i:11;s:9:"Meso_0098";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"Meso_0098";i:14;s:11:"Single gene";i:15;s:7:"1834938";i:16;s:9:"Meso_0098";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"927286-927366";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"927922-928843";i:10;s:1:"-";i:11;s:9:"Meso_0836";i:12;s:4:"PfkB";i:13;s:9:"Meso_0836";i:14;s:11:"Single gene";i:15;s:7:"1835183";i:16;s:9:"Meso_0836";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2165346-2165394";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2165431-2169019";i:10;s:1:"+";i:11;s:4:"uahA";i:12;s:0:"";i:13;s:8:"ABO_1892";i:14;s:11:"Single gene";i:15;s:7:"1840391";i:16;s:14:"ABO_1892(uahA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2215550-2215753";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2215868-2217806";i:10;s:1:"+";i:11;s:9:"Meso_2063";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Meso_2063";i:14;s:6:"Operon";i:15;s:6:"207015";i:16;s:39:"Meso_2063;Meso_2064;Meso_2065;Meso_2066";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2750090-2750207";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2750312-2752139";i:10;s:1:"+";i:11;s:9:"Meso_2561";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Meso_2561";i:14;s:11:"Single gene";i:15;s:7:"1835891";i:16;s:9:"Meso_2561";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2937284-2937539";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2934882-2937192";i:10;s:1:"-";i:11;s:9:"Meso_2701";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"Meso_2701";i:14;s:6:"Operon";i:15;s:6:"207133";i:16;s:25:"Meso_2700(ligC);Meso_2701";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2941844-2942047";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2938875-2941740";i:10;s:1:"-";i:11;s:9:"Meso_2703";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"Meso_2703";i:14;s:11:"Single gene";i:15;s:7:"1835933";i:16;s:9:"Meso_2703";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3355607-3355684";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"3354614-3355553";i:10;s:1:"-";i:11;s:9:"Meso_3083";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Meso_3083";i:14;s:11:"Single gene";i:15;s:7:"1836069";i:16;s:9:"Meso_3083";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3522172-3522274";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3522308-3523307";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:9:"Meso_3259";i:14;s:6:"Operon";i:15;s:6:"207253";i:16;s:41:"Meso_3259(tbpA);Meso_3260(thiP);Meso_3261";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3801882-3802094";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3802577-3807293";i:10;s:1:"+";i:11;s:9:"Meso_3532";i:12;s:44:"Outer membrane autotransporter barrel domain";i:13;s:9:"Meso_3532";i:14;s:11:"Single gene";i:15;s:7:"1836234";i:16;s:9:"Meso_3532";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008254.1";i:2;s:23:"Chelativorans sp. BNC1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4254495-4254583";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4253781-4254018";i:10;s:1:"+";i:11;s:9:"Meso_3948";i:12;s:38:"Transcriptional regulator; AsnC family";i:13;s:9:"Meso_3948";i:14;s:6:"Operon";i:15;s:6:"207403";i:16;s:19:"Meso_3948;Meso_3949";i:17;s:0:"";i:18;s:15:"View Structure ";}}